Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SB24_RS08000 Genome accession   NZ_CP010406
Coordinates   1726877..1727314 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1721877..1732314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS07985 (SB24_07985) - 1724736..1725098 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  SB24_RS07990 (SB24_07990) hxlA 1725330..1725965 (+) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  SB24_RS07995 (SB24_07995) hxlB 1725962..1726519 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  SB24_RS08000 (SB24_08000) nucA/comI 1726877..1727314 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SB24_RS08005 (SB24_08005) nin/comJ 1727335..1727733 (+) 399 WP_039252825.1 competence protein ComJ Regulator
  SB24_RS08010 (SB24_08010) - 1727774..1729210 (-) 1437 WP_015416781.1 family 1 glycosylhydrolase -
  SB24_RS08015 (SB24_08015) - 1729314..1729637 (-) 324 WP_007409357.1 YckD family protein -
  SB24_RS08020 (SB24_08020) - 1729709..1730143 (-) 435 WP_012116767.1 RDD family protein -
  SB24_RS08025 (SB24_08025) - 1730158..1731294 (-) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=136879 SB24_RS08000 WP_003156588.1 1726877..1727314(+) (nucA/comI) [Bacillus sp. Pc3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=136879 SB24_RS08000 WP_003156588.1 1726877..1727314(+) (nucA/comI) [Bacillus sp. Pc3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment