Detailed information NTG0136878

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SB24_RS07805
• Genome accession: NZ_CP010406
• Coordinates: 1665400..1666548 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus sp. Pc3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1660400..1671548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SB24_RS07780 (SB24_07780)	-	1660538..1661296 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
SB24_RS07785 (SB24_07785)	-	1661290..1662237 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
SB24_RS07790 (SB24_07790)	ceuB	1662227..1663180 (-)	954	WP_015239156.1	ABC transporter permease	Machinery gene
SB24_RS07795 (SB24_07795)	-	1663594..1664958 (+)	1365	WP_039252794.1	aspartate kinase	-
SB24_RS19525	-	1665053..1665148 (+)	96	WP_012116800.1	YjcZ family sporulation protein	-
SB24_RS07800 (SB24_07800)	phrC	1665297..1665416 (-)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
SB24_RS07805 (SB24_07805)	rapC	1665400..1666548 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
SB24_RS07810 (SB24_07810)	-	1666690..1668123 (-)	1434	WP_162303988.1	HAMP domain-containing sensor histidine kinase	-
SB24_RS07815 (SB24_07815)	-	1668110..1668793 (-)	684	WP_007410267.1	response regulator transcription factor	-
SB24_RS07820 (SB24_07820)	-	1669006..1670442 (+)	1437	WP_015416809.1	ABC transporter permease	-
SB24_RS07825 (SB24_07825)	-	1670457..1671140 (+)	684	WP_015416808.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=136878 SB24_RS07805 WP_007410270.1 1665400..1666548(-) (rapC) [Bacillus sp. Pc3]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=136878 SB24_RS07805 WP_007410270.1 1665400..1666548(-) (rapC) [Bacillus sp. Pc3]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568