Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   SB24_RS07800 Genome accession   NZ_CP010406
Coordinates   1665297..1665416 (-) Length   39 a.a.
NCBI ID   WP_031378677.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660297..1670416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS07780 (SB24_07780) - 1660538..1661296 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  SB24_RS07785 (SB24_07785) - 1661290..1662237 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  SB24_RS07790 (SB24_07790) ceuB 1662227..1663180 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  SB24_RS07795 (SB24_07795) - 1663594..1664958 (+) 1365 WP_039252794.1 aspartate kinase -
  SB24_RS19525 - 1665053..1665148 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  SB24_RS07800 (SB24_07800) phrC 1665297..1665416 (-) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SB24_RS07805 (SB24_07805) rapC 1665400..1666548 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  SB24_RS07810 (SB24_07810) - 1666690..1668123 (-) 1434 WP_162303988.1 HAMP domain-containing sensor histidine kinase -
  SB24_RS07815 (SB24_07815) - 1668110..1668793 (-) 684 WP_007410267.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4240.97 Da        Isoelectric Point: 8.0284

>NTDB_id=136877 SB24_RS07800 WP_031378677.1 1665297..1665416(-) (phrC) [Bacillus sp. Pc3]
MKLKSKWFVICLAAAAIFTVTGAGQPDQADFHVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=136877 SB24_RS07800 WP_031378677.1 1665297..1665416(-) (phrC) [Bacillus sp. Pc3]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGCCAGA
TCAGGCTGACTTCCATGTAACTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

75

100

0.769

Multiple sequence alignment