Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RT44_RS08090 Genome accession   NZ_CP010402
Coordinates   1645932..1646618 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640932..1651618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS08070 (RT44_08065) rpsT 1641846..1642097 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  RT44_RS08075 (RT44_08070) holA 1642142..1643116 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  RT44_RS08080 (RT44_08075) comEC 1643173..1645374 (-) 2202 WP_024937009.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RT44_RS08085 (RT44_08080) - 1645379..1645840 (-) 462 WP_000439693.1 ComE operon protein 2 -
  RT44_RS08090 (RT44_08085) comEA 1645932..1646618 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  RT44_RS08095 (RT44_08090) - 1646658..1647374 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  RT44_RS08100 (RT44_08095) rsfS 1647377..1647730 (-) 354 WP_001088022.1 ribosome silencing factor -
  RT44_RS08105 (RT44_08100) yqeK 1647731..1648315 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RT44_RS08110 (RT44_08105) nadD 1648305..1648874 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RT44_RS08115 (RT44_08110) yhbY 1648877..1649167 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  RT44_RS08120 (RT44_08115) aroE 1649171..1649977 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  RT44_RS08125 (RT44_08120) yqeH 1649991..1651091 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=136835 RT44_RS08090 WP_001788928.1 1645932..1646618(-) (comEA) [Staphylococcus aureus strain GR2]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=136835 RT44_RS08090 WP_001788928.1 1645932..1646618(-) (comEA) [Staphylococcus aureus strain GR2]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment