Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RT44_RS02685 Genome accession   NZ_CP010402
Coordinates   561294..561863 (+) Length   189 a.a.
NCBI ID   WP_000872865.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556294..566863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS02660 (RT44_02665) cysE 557507..558154 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RT44_RS02665 (RT44_02670) cysS 558138..559538 (+) 1401 WP_000631957.1 cysteine--tRNA ligase -
  RT44_RS02670 (RT44_02675) - 559531..559935 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RT44_RS02675 (RT44_02680) rlmB 559943..560689 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RT44_RS02680 (RT44_02685) - 560689..561213 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RT44_RS02685 (RT44_02690) sigH 561294..561863 (+) 570 WP_000872865.1 RNA polymerase sigma factor Regulator
  RT44_RS14445 rpmG 561978..562121 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RT44_RS02690 (RT44_02695) secE 562177..562359 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RT44_RS02695 (RT44_02700) nusG 562372..562920 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RT44_RS02700 (RT44_02705) rplK 563101..563523 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RT44_RS02705 (RT44_02710) rplA 563731..564423 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RT44_RS02710 (RT44_02715) rplJ 564695..565195 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  RT44_RS02715 (RT44_02720) rplL 565238..565606 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RT44_RS02720 (RT44_02725) - 565781..566389 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.87 Da        Isoelectric Point: 9.6015

>NTDB_id=136815 RT44_RS02685 WP_000872865.1 561294..561863(+) (sigH) [Staphylococcus aureus strain GR2]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKTI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=136815 RT44_RS02685 WP_000872865.1 561294..561863(+) (sigH) [Staphylococcus aureus strain GR2]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AACGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment