Detailed information NTG0136803

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AOY38_RS05160
• Genome accession: NZ_CP012832
• Coordinates: 1099470..1100624 (-)
• Length: 384 a.a.
• NCBI ID: WP_010872202.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1094470..1105624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY38_RS05120 (AOY38_05120)	ribH	1094905..1095399 (-)	495	WP_010872197.1	6,7-dimethyl-8-ribityllumazine synthase	-
AOY38_RS05125 (AOY38_05125)	psbZ	1095504..1095692 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
AOY38_RS16630	-	1096028..1096939 (-)	912	WP_010872199.1	M48 family metallopeptidase	-
AOY38_RS17785	-	1097114..1097245 (+)	132	WP_255345285.1	hypothetical protein	-
AOY38_RS05145 (AOY38_05145)	-	1097333..1098319 (+)	987	WP_010872200.1	S1 RNA-binding domain-containing protein	-
AOY38_RS16635	-	1098579..1099427 (+)	849	WP_010872201.1	IS630-like element ISTcSa family transposase	-
AOY38_RS05160 (AOY38_05160)	recF	1099470..1100624 (-)	1155	WP_010872202.1	DNA replication/repair protein RecF	Machinery gene
AOY38_RS05165 (AOY38_05165)	-	1100666..1102270 (-)	1605	WP_010872203.1	ABC transporter ATP-binding protein	-
AOY38_RS05170 (AOY38_05170)	pyk	1102539..1104314 (-)	1776	WP_010872204.1	pyruvate kinase	-
AOY38_RS05175 (AOY38_05175)	-	1104502..1104903 (+)	402	WP_010872205.1	DUF1824 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43743.84 Da
• Isoelectric Point: 6.3184

>NTDB_id=136803 AOY38_RS05160 WP_010872202.1 1099470..1100624(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-G]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAANGQIKALLERQYSV
AELEIDLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETGLALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVTWV
GDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLSRFDDRWRRSAQILKVNAGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=136803 AOY38_RS05160 WP_010872202.1 1099470..1100624(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-G]
ATGTACCTGAAAAAACTCTATTTACGGGCCTTTCGCAATTACCTCGAAGAAGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGGAAATCTAACTTATTGGAAGCGGTGGAACTGTTGGCAACGCTCAAAAGCCATCGCA
CTAGTCGGGATCAGGAATTGGTGCTAGACGGGGCGGCCAATGGGCAAATTAAAGCCCTACTGGAAAGGCAATACAGTGTG
GCGGAGTTAGAAATTGACCTACGGCGATCGGGGCGGCGCAACCTACGCATTAACCAAAATCAATGTCGTCGTCAGTTGGA
TTTTTTAGGCTGTTTAAATGCGGTGGAATTTTCCTGTTTAGATTTGGATTTAGTCCGGGGAGCGCCCGATTGTCGCCGTC
AATGGCTAGATACTTTGTTAACCCAGCTAGAACCCCTCTATGCCCATCTGTTGGGGCAGTACCAGCACATTGTTAAGCAA
AGAAATGCTCTACTAAAAAGCCTACGACAACAATGGGAAACGGGACTAGCTTTGGGGGAAGAGTCGACAGCTTCTTTGTC
TCTCTGGGACCAGCAGTTGGTGGAAATGGGCACTAGGGTAGTCCGCCGTCGGGCGAGGGGTTTAGCCCGTCTTGCTCCTT
TGGCCCAGGAATGGCATGGGCGCATTAGCGGTGGCAATGAAACCCTGACCGTTACCTATCAACCCAATGTCACCTGGGTG
GGGGATGATCCGGAAGTGGTGCACCAGGCTTTTTTAGAAAAATTAGCCCAACGGCGATCGGCAGAATTACATCTGGGGAC
AACGGTGGTGGGGCCCCATCGGGACGAAGTGGGGTTTGTCCTCGACGACACTCCCGCTAGAACCTATGGCTCCCAGGGAC
AGCAAAGAACTCTAGTCCTAGCATTAAAATTGGCGGAATTGAGCTTGATTGAAACGGTTATTGGAGAACCACCACTGTTG
TTATTGGACGATGTCTTGGCGGAATTAGACCTCGATCGCCAGGGACAATTGTTAATGGCCATTGAGGATCGTTTTCAAAC
CCTGATCACCACCACCCATTTAAGTCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATTCTCAAAGTTAATGCTGGTC
AACTAGAGGAACGGTGGCCGTCCGAAATTGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.727	98.177	0.38
recF	Streptococcus pneumoniae R6	39.266	92.188	0.362