Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | RU84_RS09380 | Genome accession | NZ_CP010397 |
| Coordinates | 2027083..2027463 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 6200 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2022083..2032463
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RU84_RS09350 (RU84_09350) | tadA | 2022200..2022704 (-) | 505 | Protein_1842 | tRNA adenosine(34) deaminase TadA | - |
| RU84_RS09355 (RU84_09355) | - | 2022711..2023835 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| RU84_RS09360 (RU84_09360) | ung | 2023832..2024545 (-) | 714 | WP_029424376.1 | uracil-DNA glycosylase | - |
| RU84_RS09365 (RU84_09365) | - | 2024596..2025192 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| RU84_RS09370 (RU84_09370) | gspK | 2025423..2026382 (-) | 960 | WP_029424377.1 | type II secretion system minor pseudopilin GspK | - |
| RU84_RS09375 (RU84_09375) | xcpW | 2026382..2027083 (-) | 702 | WP_039244803.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| RU84_RS09380 (RU84_09380) | xcpV | 2027083..2027463 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| RU84_RS09385 (RU84_09385) | - | 2027453..2028007 (-) | 555 | WP_005128793.1 | type II secretion system protein | - |
| RU84_RS09390 (RU84_09390) | - | 2028017..2028625 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| RU84_RS09395 (RU84_09395) | - | 2028663..2029436 (-) | 774 | WP_000497295.1 | TatD family hydrolase | - |
| RU84_RS09400 (RU84_09400) | - | 2029454..2029795 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| RU84_RS09405 (RU84_09405) | - | 2029807..2030787 (-) | 981 | WP_001075409.1 | DNA polymerase III subunit delta' | - |
| RU84_RS09410 (RU84_09410) | kdsB | 2030799..2031560 (-) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=136777 RU84_RS09380 WP_000836911.1 2027083..2027463(-) (xcpV) [Acinetobacter baumannii strain 6200]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=136777 RU84_RS09380 WP_000836911.1 2027083..2027463(-) (xcpV) [Acinetobacter baumannii strain 6200]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |