Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RU84_RS01935 Genome accession   NZ_CP010397
Coordinates   415737..416372 (-) Length   211 a.a.
NCBI ID   WP_017815938.1    Uniprot ID   A0AAX0TVF9
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410737..421372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS01900 (RU84_01900) mlaE 411073..411849 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RU84_RS01905 (RU84_01905) - 411849..412529 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RU84_RS01910 (RU84_01910) - 412556..413197 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RU84_RS01915 (RU84_01915) - 413209..413496 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RU84_RS01920 (RU84_01920) - 413566..414579 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RU84_RS01925 (RU84_01925) - 414737..415318 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  RU84_RS01930 (RU84_01930) - 415333..415734 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  RU84_RS01935 (RU84_01935) comF 415737..416372 (-) 636 WP_017815938.1 ComF family protein Machinery gene
  RU84_RS01940 (RU84_01940) recG 416365..418410 (-) 2046 WP_000204961.1 ATP-dependent DNA helicase RecG -
  RU84_RS01945 (RU84_01945) - 418431..419246 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  RU84_RS01950 (RU84_01950) adeT2 419326..420312 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=136768 RU84_RS01935 WP_017815938.1 415737..416372(-) (comF) [Acinetobacter baumannii strain 6200]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=136768 RU84_RS01935 WP_017815938.1 415737..416372(-) (comF) [Acinetobacter baumannii strain 6200]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment