Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | RR32_RS10065 | Genome accession | NZ_CP010368 |
| Coordinates | 2125629..2126009 (-) | Length | 126 a.a. |
| NCBI ID | WP_016804844.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain 6411 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2120629..2131009
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR32_RS10040 (RR32_10045) | - | 2121090..2122214 (-) | 1125 | WP_006580787.1 | enoyl-CoA hydratase/isomerase family protein | - |
| RR32_RS10045 (RR32_10050) | ung | 2122211..2122924 (-) | 714 | WP_002049829.1 | uracil-DNA glycosylase | - |
| RR32_RS10050 (RR32_10055) | - | 2122975..2123571 (-) | 597 | WP_004887474.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| RR32_RS10055 (RR32_10060) | gspK | 2123801..2124760 (-) | 960 | WP_039247875.1 | type II secretion system minor pseudopilin GspK | - |
| RR32_RS10060 (RR32_10065) | xcpW | 2124760..2125629 (-) | 870 | WP_032047939.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| RR32_RS10065 (RR32_10070) | xcpV | 2125629..2126009 (-) | 381 | WP_016804844.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| RR32_RS10070 (RR32_10075) | - | 2125999..2126550 (-) | 552 | WP_050049513.1 | type II secretion system protein | - |
| RR32_RS10075 (RR32_10080) | - | 2126560..2127168 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| RR32_RS10080 (RR32_10085) | - | 2127206..2127979 (-) | 774 | WP_004709116.1 | TatD family hydrolase | - |
| RR32_RS10085 (RR32_10090) | - | 2127997..2128338 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| RR32_RS10090 (RR32_10095) | - | 2128351..2129331 (-) | 981 | WP_032047942.1 | DNA polymerase III subunit delta' | - |
| RR32_RS10095 (RR32_10100) | kdsB | 2129343..2130104 (-) | 762 | WP_004887485.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13961.18 Da Isoelectric Point: 9.8004
>NTDB_id=136617 RR32_RS10065 WP_016804844.1 2125629..2126009(-) (xcpV) [Acinetobacter nosocomialis strain 6411]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=136617 RR32_RS10065 WP_016804844.1 2125629..2126009(-) (xcpV) [Acinetobacter nosocomialis strain 6411]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAACAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAACAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |