Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RR32_RS02450 Genome accession   NZ_CP010368
Coordinates   508866..509750 (+) Length   294 a.a.
NCBI ID   WP_039246295.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503866..514750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS02425 (RR32_02430) - 504258..505505 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  RR32_RS02430 (RR32_02435) wrbA 505786..506388 (+) 603 WP_174876285.1 NAD(P)H:quinone oxidoreductase -
  RR32_RS02435 (RR32_02440) - 506443..507018 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  RR32_RS02440 (RR32_02445) - 507090..507803 (-) 714 WP_002050776.1 DUF3108 domain-containing protein -
  RR32_RS02445 (RR32_02450) - 507961..508632 (-) 672 WP_031956479.1 hypothetical protein -
  RR32_RS02450 (RR32_02455) tonB2 508866..509750 (+) 885 WP_039246295.1 energy transducer TonB Machinery gene
  RR32_RS02455 (RR32_02460) ybeY 509840..510316 (-) 477 WP_004711856.1 rRNA maturation RNase YbeY -
  RR32_RS02460 (RR32_02465) - 510326..511414 (-) 1089 WP_002050786.1 PhoH family protein -
  RR32_RS02465 (RR32_02470) miaB 511452..512903 (-) 1452 WP_002050781.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33614.47 Da        Isoelectric Point: 9.4514

>NTDB_id=136610 RR32_RS02450 WP_039246295.1 508866..509750(+) (tonB2) [Acinetobacter nosocomialis strain 6411]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFILLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=136610 RR32_RS02450 WP_039246295.1 508866..509750(+) (tonB2) [Acinetobacter nosocomialis strain 6411]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATCCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGTTACGTATTGTACGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

95.238

100

0.952

Multiple sequence alignment