Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RR32_RS02105 Genome accession   NZ_CP010368
Coordinates   450801..451436 (-) Length   211 a.a.
NCBI ID   WP_039249311.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445801..456436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS02070 (RR32_02075) mlaE 446129..446905 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RR32_RS02075 (RR32_02080) - 446905..447588 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RR32_RS02080 (RR32_02085) - 447615..448256 (+) 642 WP_002049753.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  RR32_RS02085 (RR32_02090) - 448268..448555 (+) 288 WP_000250997.1 STAS domain-containing protein -
  RR32_RS02090 (RR32_02095) - 448630..449643 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  RR32_RS02095 (RR32_02100) - 449801..450382 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  RR32_RS02100 (RR32_02105) - 450397..450798 (+) 402 WP_039246252.1 NUDIX hydrolase -
  RR32_RS02105 (RR32_02110) comF 450801..451436 (-) 636 WP_039249311.1 ComF family protein Machinery gene
  RR32_RS02110 (RR32_02115) recG 451429..453474 (-) 2046 WP_022575959.1 ATP-dependent DNA helicase RecG -
  RR32_RS02115 (RR32_02120) - 453495..454310 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  RR32_RS02120 (RR32_02125) adeT2 454390..455376 (+) 987 WP_004711792.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24556.79 Da        Isoelectric Point: 10.0144

>NTDB_id=136608 RR32_RS02105 WP_039249311.1 450801..451436(-) (comF) [Acinetobacter nosocomialis strain 6411]
MFKLFNPQYLFQLLSPCLLCGIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=136608 RR32_RS02105 WP_039249311.1 450801..451436(-) (comF) [Acinetobacter nosocomialis strain 6411]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGGAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAGGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGCGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment