Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SanJ4211_RS09230 Genome accession   NZ_CP012805
Coordinates   1833836..1834426 (-) Length   196 a.a.
NCBI ID   WP_021002202.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828836..1839426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS09205 (SanJ4211_1832c) spx 1829177..1829575 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SanJ4211_RS09210 (SanJ4211_1833c) recA 1829662..1830807 (-) 1146 WP_021002199.1 recombinase RecA Machinery gene
  SanJ4211_RS09215 (SanJ4211_1834c) cinA 1830852..1832123 (-) 1272 WP_021002200.1 competence/damage-inducible protein A Machinery gene
  SanJ4211_RS09220 - 1832724..1833144 (+) 421 Protein_1799 EamA family transporter -
  SanJ4211_RS09225 (SanJ4211_1836c) - 1833247..1833825 (-) 579 WP_021002201.1 DNA-3-methyladenine glycosylase I -
  SanJ4211_RS09230 (SanJ4211_1837c) ruvA 1833836..1834426 (-) 591 WP_021002202.1 Holliday junction branch migration protein RuvA Machinery gene
  SanJ4211_RS09235 (SanJ4211_1838) - 1834588..1835097 (+) 510 WP_003026648.1 helix-turn-helix domain-containing protein -
  SanJ4211_RS09240 (SanJ4211_1839c) hexB 1835480..1837426 (-) 1947 WP_003026650.1 DNA mismatch repair endonuclease MutL Machinery gene
  SanJ4211_RS09245 (SanJ4211_1840) brsR 1837671..1838111 (+) 441 WP_041784066.1 LytTR family DNA-binding domain-containing protein Regulator
  SanJ4211_RS09250 (SanJ4211_1841) - 1838108..1838566 (+) 459 WP_021002204.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21581.05 Da        Isoelectric Point: 6.4894

>NTDB_id=136571 SanJ4211_RS09230 WP_021002202.1 1833836..1834426(-) (ruvA) [Streptococcus anginosus strain J4211]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=136571 SanJ4211_RS09230 WP_021002202.1 1833836..1834426(-) (ruvA) [Streptococcus anginosus strain J4211]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCTGCCCTCAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.279

100

0.857
  ruvA Streptococcus pneumoniae D39

85.279

100

0.857
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423

Multiple sequence alignment