Detailed information NTG0136571

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EHS42_RS15500
• Genome accession: NZ_CP010350
• Coordinates: 3158701..3159561 (+)
• Length: 286 a.a.
• NCBI ID: WP_010325766.1
• Uniprot ID: A0AAJ6ICQ0
• Organism: Acinetobacter johnsonii XBB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3153701..3164561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHS42_RS15480 (RZ95_15330)	secG	3154318..3154647 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
EHS42_RS15485 (RZ95_15335)	tpiA	3154661..3155452 (-)	792	WP_010325769.1	triose-phosphate isomerase	-
EHS42_RS15490 (RZ95_15340)	pilB	3155732..3157444 (+)	1713	WP_010325768.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EHS42_RS15495 (RZ95_15345)	pilC	3157475..3158701 (+)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
EHS42_RS15500 (RZ95_15350)	pilD	3158701..3159561 (+)	861	WP_010325766.1	prepilin peptidase	Machinery gene
EHS42_RS15505 (RZ95_15355)	coaE	3159568..3160167 (+)	600	WP_010325765.1	dephospho-CoA kinase	-
EHS42_RS15510 (RZ95_15360)	-	3160183..3161100 (-)	918	WP_029574926.1	DMT family transporter	-
EHS42_RS15515 (RZ95_15365)	rlmB	3161133..3161882 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EHS42_RS15520 (RZ95_15370)	-	3162025..3162348 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
EHS42_RS15525 (RZ95_15375)	recN	3162740..3164401 (+)	1662	WP_010325763.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31939.35 Da
• Isoelectric Point: 8.2623

>NTDB_id=136571 EHS42_RS15500 WP_010325766.1 3158701..3159561(+) (pilD) [Acinetobacter johnsonii XBB1]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLIHPEQPIIDETKLSLSKPASTCPKCKSA
IRWYQNVPVISWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILITLTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=136571 EHS42_RS15500 WP_010325766.1 3158701..3159561(+) (pilD) [Acinetobacter johnsonii XBB1]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATTGG
TAGTTTCCTGAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGATTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCAAATGCAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTAATTAGCTGGTTACTGCTACGAGGAAAGTGTGGCACTTGTCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGTCCAACAATCCAAA
TGCTGTTCGGTCTCGTACTCACTTACATTTTAATCACCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTACATCATTGGTTTCTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG
GTGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGTCCTTTGCTACTACCACTGATTGTGCTACTTTCTTCTTTC
GTAGGCGCCATTATCGGCATCATCCTGCTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCTTTTGGTCCGTATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.947	99.65	0.787
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Vibrio cholerae strain A1552	53.731	93.706	0.503
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437