Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EHS42_RS01905 Genome accession   NZ_CP010350
Coordinates   392610..393257 (-) Length   215 a.a.
NCBI ID   WP_010327610.1    Uniprot ID   A0A1T1J305
Organism   Acinetobacter johnsonii XBB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 393244..397859 392610..393257 flank -13


Gene organization within MGE regions


Location: 392610..397859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHS42_RS01905 (RZ95_01900) comF 392610..393257 (-) 648 WP_010327610.1 ComF family protein Machinery gene
  EHS42_RS01910 (RZ95_01905) recG 393244..395289 (-) 2046 WP_010327609.1 ATP-dependent DNA helicase RecG -
  EHS42_RS01915 (RZ95_01910) - 395323..396138 (+) 816 WP_010327608.1 NAD-dependent epimerase/dehydratase family protein -
  EHS42_RS01920 (RZ95_01915) - 396330..396563 (+) 234 WP_029575124.1 DUF6500 family protein -
  EHS42_RS01925 (RZ95_01920) istA 396840..397859 (+) 1020 WP_010327603.1 IS21 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24923.14 Da        Isoelectric Point: 9.1966

>NTDB_id=136547 EHS42_RS01905 WP_010327610.1 392610..393257(-) (comF) [Acinetobacter johnsonii XBB1]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDKIHQQ
FKIDSQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=136547 EHS42_RS01905 WP_010327610.1 392610..393257(-) (comF) [Acinetobacter johnsonii XBB1]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATACGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCGAAAGTGCAAGCAATTGTTCCTATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATAAAATTCATCAACAG
TTTAAAATCGATTCACAGCAACGCCAGTACGTAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCAGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1J305

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.45

98.14

0.544
  comF Acinetobacter baumannii strain A118

58.247

90.233

0.526

Multiple sequence alignment