Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   SanJ4211_RS00255 Genome accession   NZ_CP012805
Coordinates   39819..41753 (-) Length   644 a.a.
NCBI ID   WP_057489499.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 34819..46753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS00235 (SanJ4211_0026) purF 34891..36354 (+) 1464 WP_021001146.1 amidophosphoribosyltransferase -
  SanJ4211_RS00240 (SanJ4211_0027) purM 36396..37418 (+) 1023 WP_171004455.1 phosphoribosylformylglycinamidine cyclo-ligase -
  SanJ4211_RS00245 (SanJ4211_0028) purN 37418..37972 (+) 555 WP_021001148.1 phosphoribosylglycinamide formyltransferase -
  SanJ4211_RS00250 (SanJ4211_0029) purH 38213..39760 (+) 1548 WP_021001149.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SanJ4211_RS00255 (SanJ4211_0030c) lytF 39819..41753 (-) 1935 WP_057489499.1 GBS Bsp-like repeat-containing protein Regulator
  SanJ4211_RS00260 (SanJ4211_0032) purD 41948..43213 (+) 1266 WP_021001151.1 phosphoribosylamine--glycine ligase -
  SanJ4211_RS00265 (SanJ4211_0033) - 43203..43637 (+) 435 WP_003032062.1 DUF523 domain-containing protein -
  SanJ4211_RS00270 (SanJ4211_0035) purE 43875..44363 (+) 489 WP_021001152.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SanJ4211_RS00275 (SanJ4211_0036) purK 44350..45438 (+) 1089 WP_021001153.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SanJ4211_RS00280 (SanJ4211_0037) - 45450..45686 (+) 237 WP_021001154.1 hypothetical protein -

Sequence


Protein


Download         Length: 644 a.a.        Molecular weight: 71090.88 Da        Isoelectric Point: 8.7216

>NTDB_id=136467 SanJ4211_RS00255 WP_057489499.1 39819..41753(-) (lytF) [Streptococcus anginosus strain J4211]
MKKYSQLFLLSSTILGVFSAQLTAQASEADNAQKSSNPAILASNITVNVSGNTASINYTRSQTQVPYTIYHAVWSDENGQ
DDIKWYSAPQTPTTAIDLRQHTGYGTFHVHTYININGKMVGLNGTTFKVEKPASGTVSTTVLGKTAQISFTRNKDQTNAN
ILHAVWSDEKGQDDIKWYTAGQDTTEIDLSNHKGYGVYHVHTYESKNGKMIGLNGTTFNLEKPNPTIQTSFPEPGIMDIQ
IKNVPKTIYKLTVPAWSDRNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGITAQVDA
DKLPSEEEQKPFFSVENINQEQGTYTVKVSETSKSKPIQSVRVPIWSTSNQSNIKWYAATNHGDGTFTTSFDIRNHQVLS
GTYTNHIYVKYKDGSEHSYATDSVAMSAEKIKTKVSVAKRSTYLYEVTVTDAYGDGKISLPTWSEVNGQDDIQWYTATKA
GNGIYKFTIDTQKHTGSGLFHTHVYRNLNGQMIGLTGTSYQVEKPAISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWG
NGGDWAASARRAGFKTGTTPQVGAIICWTDGGYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGAVSY
IYPK

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=136467 SanJ4211_RS00255 WP_057489499.1 39819..41753(-) (lytF) [Streptococcus anginosus strain J4211]
ATGAAGAAATACAGTCAATTATTTTTACTATCTAGCACTATTTTGGGCGTTTTTTCTGCTCAACTAACTGCTCAAGCCTC
GGAAGCAGATAATGCTCAAAAAAGCTCAAATCCAGCAATTCTTGCTAGCAACATTACCGTCAATGTTTCTGGAAATACAG
CTTCTATTAACTACACACGCTCACAGACACAAGTTCCTTACACCATTTACCACGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACATTAAGTGGTATTCCGCGCCCCAAACACCAACTACAGCTATTGATTTGCGTCAGCACACTGGTTATGGAACCTT
TCATGTTCACACTTATATCAATATCAATGGAAAAATGGTTGGTTTAAACGGAACGACTTTCAAAGTAGAAAAACCAGCTA
GCGGCACGGTTTCTACAACCGTTTTAGGAAAGACTGCTCAAATATCCTTTACTCGAAACAAAGATCAAACAAATGCCAAT
ATTTTACACGCTGTTTGGTCTGACGAAAAAGGACAAGATGACATCAAGTGGTATACGGCAGGGCAAGACACAACAGAAAT
TGACTTATCCAATCATAAAGGATACGGTGTTTACCATGTTCATACTTATGAAAGTAAAAACGGAAAGATGATTGGATTAA
ATGGCACCACTTTTAACCTTGAAAAACCAAATCCTACTATTCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAG
ATCAAAAATGTTCCTAAAACAATCTACAAACTAACTGTTCCGGCTTGGTCTGACCGCAACGGACAGGATGATCTTCAATG
GTATGCAGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTT
ATCACATTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATAACTGCCCAAGTTGATGCT
GATAAATTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATCAAGAACAAGGGACTTATACCGT
CAAAGTTAGTGAAACTTCAAAGTCCAAACCGATTCAATCTGTCCGAGTACCTATTTGGAGCACGAGCAATCAAAGCAATA
TCAAGTGGTATGCAGCCACTAATCACGGTGATGGAACCTTTACGACAAGCTTTGATATTCGCAATCATCAAGTTTTGTCC
GGAACATACACCAATCATATTTATGTGAAATATAAAGACGGTAGCGAGCATAGTTACGCAACGGATTCGGTTGCTATGTC
CGCAGAAAAAATTAAAACCAAAGTATCTGTCGCTAAACGCTCAACTTATCTTTATGAAGTGACGGTGACAGATGCTTACG
GCGATGGCAAGATCAGCCTACCGACTTGGTCTGAAGTCAATGGACAAGACGATATTCAGTGGTACACTGCTACTAAAGCT
GGAAATGGAATTTACAAATTCACAATTGATACGCAAAAACACACTGGCAGCGGGCTTTTCCATACACATGTCTACCGCAA
TCTCAACGGTCAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAGCCTGCTATCTCTTTCCAACCAAATTATG
CCGCAGCAACGACTTATCCAAAAGGTCAATGCACTTGGGGCGCCAAAGCTCTTGCGCCTTGGGCTGGCAATTATTGGGGC
AACGGTGGCGACTGGGCTGCTAGTGCCAGACGAGCTGGTTTTAAAACCGGTACAACTCCACAAGTAGGGGCTATTATTTG
TTGGACAGACGGTGGTTACGGTCACGTTGGAGTTGTTACTCACGTTGCCTCAAACACACGCATTCAGATTCAAGAGGCCA
ACTACGCTGGAAAACAATATATTGGCAACTTCCGCGGCTGGTTCAATCCTCATGCAGCTGGACAAGGAGCAGTTAGTTAC
ATTTATCCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.785

81.056

0.371

  lytF Streptococcus gordonii str. Challis substr. CH1

44.961

80.124

0.36