Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACH32_RS11845 Genome accession   NZ_CP012756
Coordinates   2342434..2343420 (+) Length   328 a.a.
NCBI ID   WP_060649834.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JS395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2337434..2348420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH32_RS11825 (ACH32_11815) trpS 2337558..2338547 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACH32_RS11830 (ACH32_11820) spxA 2338842..2339237 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACH32_RS11835 (ACH32_11825) mecA 2339608..2340327 (+) 720 WP_001217728.1 adaptor protein MecA -
  ACH32_RS15060 - 2340378..2342024 (-) 1647 WP_000277738.1 IS1182-like element ISSau3 family transposase -
  ACH32_RS11845 (ACH32_11835) coiA 2342434..2343420 (+) 987 WP_060649834.1 competence protein CoiA Machinery gene
  ACH32_RS11850 (ACH32_11840) pepF 2343468..2345276 (+) 1809 WP_000082725.1 oligoendopeptidase F Regulator
  ACH32_RS11855 (ACH32_11845) yjbH 2345736..2346542 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACH32_RS11860 (ACH32_11850) - 2346565..2346930 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACH32_RS11865 (ACH32_11855) - 2347034..2347627 (-) 594 WP_000224614.1 CYTH domain-containing protein -
  ACH32_RS11870 (ACH32_11860) - 2347813..2348160 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38815.47 Da        Isoelectric Point: 9.7732

>NTDB_id=136366 ACH32_RS11845 WP_060649834.1 2342434..2343420(+) (coiA) [Staphylococcus aureus strain JS395]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=136366 ACH32_RS11845 WP_060649834.1 2342434..2343420(+) (coiA) [Staphylococcus aureus strain JS395]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.341

100

0.963
  coiA Staphylococcus aureus MW2

96.037

100

0.96

Multiple sequence alignment