Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RP72_RS20145 Genome accession   NZ_CP010314
Coordinates   3826626..3826745 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3821626..3831745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP72_RS20120 (RP72_20120) albG 3821790..3822491 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  RP72_RS20125 (RP72_20125) ywhL 3822497..3823873 (-) 1377 WP_003244415.1 YncE family protein -
  RP72_RS20130 (RP72_20130) ywhK 3823912..3825267 (-) 1356 WP_003227552.1 YncE family protein -
  RP72_RS23800 (RP72_20135) - 3825264..3825494 (-) 231 WP_009968328.1 hypothetical protein -
  RP72_RS20140 (RP72_20140) rapF 3825497..3826642 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  RP72_RS20145 (RP72_20145) phrF 3826626..3826745 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  RP72_RS20150 (RP72_20150) ywhH 3826844..3827317 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  RP72_RS20155 (RP72_20155) speB 3827349..3828221 (-) 873 WP_003227545.1 agmatinase -
  RP72_RS20160 (RP72_20160) speE 3828282..3829112 (-) 831 WP_003227543.1 spermidine synthase -
  RP72_RS20165 (RP72_20165) pbpG 3829314..3831389 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=136313 RP72_RS20145 WP_009968329.1 3826626..3826745(+) (phrF) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=136313 RP72_RS20145 WP_009968329.1 3826626..3826745(+) (phrF) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment