Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   RP72_RS17155 Genome accession   NZ_CP010314
Coordinates   3236586..3236726 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 3231586..3241726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP72_RS17130 (RP72_17130) yuxO 3231899..3232279 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  RP72_RS17135 (RP72_17135) comA 3232298..3232942 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RP72_RS17140 (RP72_17140) comP 3233023..3235332 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  RP72_RS17145 (RP72_17145) comX 3235347..3235514 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  RP72_RS17150 (RP72_17150) comQ 3235502..3236401 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  RP72_RS17155 (RP72_17155) degQ 3236586..3236726 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RP72_RS23445 - 3236948..3237073 (+) 126 WP_003228793.1 hypothetical protein -
  RP72_RS17160 (RP72_17160) - 3237187..3237555 (+) 369 WP_003243784.1 hypothetical protein -
  RP72_RS17165 (RP72_17165) pdeH 3237531..3238760 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  RP72_RS17170 (RP72_17170) pncB 3238897..3240369 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  RP72_RS17175 (RP72_17175) pncA 3240385..3240936 (-) 552 WP_003243099.1 isochorismatase family cysteine hydrolase -
  RP72_RS17180 (RP72_17180) yueI 3241033..3241431 (-) 399 WP_003242987.1 YueI family protein -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=136302 RP72_RS17155 WP_003220708.1 3236586..3236726(-) (degQ) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=136302 RP72_RS17155 WP_003220708.1 3236586..3236726(-) (degQ) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment