Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AN924_RS05460 Genome accession   NZ_CP012731
Coordinates   1074844..1075938 (-) Length   364 a.a.
NCBI ID   WP_002936177.1    Uniprot ID   -
Organism   Streptococcus suis strain 90-1330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069844..1080938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN924_RS05445 (AN924_11400) trpS 1070213..1071238 (+) 1026 WP_013730696.1 tryptophan--tRNA ligase -
  AN924_RS05450 (AN924_11420) guaB 1071470..1072951 (+) 1482 WP_014637236.1 IMP dehydrogenase -
  AN924_RS05455 (AN924_11430) - 1073202..1074404 (+) 1203 WP_009909264.1 IS110-like element ISSsu7 family transposase -
  AN924_RS05460 (AN924_11440) recF 1074844..1075938 (-) 1095 WP_002936177.1 DNA replication/repair protein RecF Machinery gene
  AN924_RS05465 (AN924_11450) yaaA 1075941..1076324 (-) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  AN924_RS05470 (AN924_11460) - 1076462..1077634 (-) 1173 WP_013730693.1 tyrosine-type recombinase/integrase -
  AN924_RS05475 (AN924_11470) - 1077799..1078629 (-) 831 WP_013730692.1 KilA-N domain-containing protein -
  AN924_RS05480 (AN924_11480) - 1078993..1079706 (-) 714 WP_013730691.1 helix-turn-helix domain-containing protein -
  AN924_RS05485 (AN924_11490) - 1079860..1080087 (+) 228 WP_013730690.1 helix-turn-helix domain-containing protein -
  AN924_RS05490 (AN924_11500) - 1080106..1080852 (+) 747 WP_013730689.1 Bro-N domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42217.34 Da        Isoelectric Point: 7.2235

>NTDB_id=136173 AN924_RS05460 WP_002936177.1 1074844..1075938(-) (recF) [Streptococcus suis strain 90-1330]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=136173 AN924_RS05460 WP_002936177.1 1074844..1075938(-) (recF) [Streptococcus suis strain 90-1330]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442