Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PJ17_RS03070 Genome accession   NZ_CP010306
Coordinates   589247..590020 (+) Length   257 a.a.
NCBI ID   WP_002870087.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 00-1597     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 584247..595020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ17_RS03055 (PJ17_03055) - 585096..587030 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  PJ17_RS03060 (PJ17_03060) ilvC 587149..588171 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  PJ17_RS03065 (PJ17_03065) - 588175..589257 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  PJ17_RS03070 (PJ17_03070) dprA 589247..590020 (+) 774 WP_002870087.1 DNA-processing protein DprA Machinery gene
  PJ17_RS03075 (PJ17_03075) ruvX 590017..590400 (+) 384 WP_042635825.1 Holliday junction resolvase RuvX -
  PJ17_RS03080 (PJ17_03080) - 590429..591268 (+) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PJ17_RS03085 (PJ17_03085) msrA 591443..591940 (-) 498 WP_042635826.1 peptide-methionine (S)-S-oxide reductase MsrA -
  PJ17_RS03090 (PJ17_03090) ppa 591981..592499 (-) 519 WP_002870091.1 inorganic diphosphatase -
  PJ17_RS03095 (PJ17_03095) adk 592509..593087 (-) 579 WP_002855137.1 adenylate kinase -
  PJ17_RS03100 (PJ17_03100) aspS 593084..594835 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28847.67 Da        Isoelectric Point: 7.6511

>NTDB_id=136145 PJ17_RS03070 WP_002870087.1 589247..590020(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 00-1597]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASININQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=136145 PJ17_RS03070 WP_002870087.1 589247..590020(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 00-1597]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAAATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment