Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SanJ4206_RS01030 Genome accession   NZ_CP012719
Coordinates   204833..205516 (+) Length   227 a.a.
NCBI ID   WP_003028465.1    Uniprot ID   A0ABD7NBZ0
Organism   Streptococcus anginosus strain J4206     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 199833..210516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS01030 (SanJ4206_0168) lytF 204833..205516 (+) 684 WP_003028465.1 CHAP domain-containing protein Regulator
  SanJ4206_RS01035 (SanJ4206_0169) - 205667..206197 (+) 531 WP_003028466.1 FUSC family protein -
  SanJ4206_RS01040 (SanJ4206_0170) - 206274..206633 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  SanJ4206_RS01045 (SanJ4206_0171) glnA 206672..208018 (+) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  SanJ4206_RS01050 (SanJ4206_0172) - 208203..208568 (+) 366 WP_022525291.1 DUF1033 family protein -
  SanJ4206_RS01055 (SanJ4206_0173) comGA 208638..209579 (+) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24474.54 Da        Isoelectric Point: 8.9908

>NTDB_id=136015 SanJ4206_RS01030 WP_003028465.1 204833..205516(+) (lytF) [Streptococcus anginosus strain J4206]
MKVSQLSKYPHIGKFTVGLSAAVLLLIVSKNTAKADAYTVQYGDSFYDIATKFGMSPYDLAAKNGKIIYDTILPVDTLQV
NGPTATTVSQTNAVAQPTATSAGPSSDTEDVVLNTPTTTGNSYPVGQCAWGVKTLAPWASNWWGNAKDWVANAAYSGFRI
GTTPQVGAIAVWDGGQFGHVAYVTAVANNRAIQVLESNYKGQKQVNNYRGWFDPTIFYGKVTYIYPY

Nucleotide


Download         Length: 684 bp        

>NTDB_id=136015 SanJ4206_RS01030 WP_003028465.1 204833..205516(+) (lytF) [Streptococcus anginosus strain J4206]
ATGAAAGTCAGTCAATTATCTAAGTATCCCCATATAGGCAAGTTTACAGTTGGGCTCTCAGCAGCTGTTTTATTGTTGAT
AGTAAGTAAAAACACAGCTAAAGCAGATGCCTATACAGTTCAATATGGTGATTCATTTTATGATATTGCGACAAAATTTG
GAATGAGTCCCTATGATTTAGCGGCAAAAAATGGAAAAATAATTTACGATACTATCCTTCCTGTAGATACGTTACAAGTA
AATGGCCCAACGGCTACTACTGTTAGTCAGACAAATGCAGTAGCACAACCAACTGCTACAAGTGCAGGTCCAAGTTCTGA
TACAGAGGATGTGGTACTAAATACGCCTACAACAACAGGAAACTCTTATCCAGTTGGTCAATGCGCTTGGGGTGTAAAAA
CATTGGCACCTTGGGCTAGTAATTGGTGGGGAAATGCAAAAGATTGGGTTGCCAATGCTGCATACTCAGGCTTTCGTATA
GGAACAACTCCTCAAGTTGGAGCCATTGCTGTTTGGGATGGCGGTCAATTTGGACATGTAGCCTATGTAACAGCTGTGGC
AAATAATCGCGCAATTCAAGTGCTGGAGTCAAATTACAAAGGTCAAAAACAAGTTAACAATTACCGTGGTTGGTTTGACC
CTACAATATTTTATGGAAAGGTAACTTATATTTACCCTTATTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(38-80)

CHAP domain (CHAP)

(120-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NBZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

47.753

78.414

0.374
  lytF Streptococcus gordonii str. Challis substr. CH1

47.191

78.414

0.37