Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RN86_RS03425 Genome accession   NZ_CP012648
Coordinates   698756..699679 (+) Length   307 a.a.
NCBI ID   WP_053794294.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 693756..704679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS03400 (RN86_03395) purB 694229..695524 (+) 1296 WP_009443505.1 adenylosuccinate lyase -
  RN86_RS03405 (RN86_03400) - 695569..696135 (-) 567 WP_053794290.1 NAD(P)H-dependent oxidoreductase -
  RN86_RS03410 (RN86_03405) - 696132..696728 (-) 597 WP_053794291.1 TetR/AcrR family transcriptional regulator -
  RN86_RS03415 (RN86_03410) - 696980..697693 (-) 714 WP_053794292.1 hypothetical protein -
  RN86_RS03420 (RN86_03415) - 697709..698401 (-) 693 WP_053794293.1 hypothetical protein -
  RN86_RS03425 (RN86_03420) comR 698756..699679 (+) 924 WP_053794294.1 XRE family transcriptional regulator Regulator
  RN86_RS03430 (RN86_03425) - 699914..700141 (+) 228 WP_053794295.1 hypothetical protein -
  RN86_RS03435 (RN86_03430) - 700138..700974 (+) 837 WP_172672759.1 ABC transporter ATP-binding protein -
  RN86_RS03440 (RN86_03435) - 700967..701722 (+) 756 WP_012131041.1 ABC transporter permease -
  RN86_RS03445 (RN86_03440) rpmG 702233..702382 (-) 150 WP_001265622.1 50S ribosomal protein L33 -
  RN86_RS03450 (RN86_03445) rpmF 702398..702580 (-) 183 WP_008809991.1 50S ribosomal protein L32 -
  RN86_RS03455 (RN86_03450) ilvD 702822..704528 (+) 1707 WP_008809990.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 36100.58 Da        Isoelectric Point: 5.2023

>NTDB_id=135443 RN86_RS03425 WP_053794294.1 698756..699679(+) (comR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MTVEDKDAELKLKIGNNIRTARLNKNFTQADVCGDESELTIRQLARIENGQVLVSLSKLLFLSKVLNFPVKDIVDIEKIE
IPKRYLELKNKLIRAHTYGDEKRIGILEEMFDEIYENFYDHLPEEEQPLVEVLQAQLDVFSSRDVTYGLTLLEEYLHQIL
KKKKYSYNDLLIINLYFVCCAIGLEDKTYFEELSKKVLLYIDYSDNERIYILERILIGILTQVKIEDYLIYTKVFREITE
STNNFQHKPVIYAFEAKYYLKVEKNHHKAEQSYNKAIEFAKMLNDQVLVNNLTKEKERDLGGNISIT

Nucleotide


Download         Length: 924 bp        

>NTDB_id=135443 RN86_RS03425 WP_053794294.1 698756..699679(+) (comR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGACTGTTGAGGATAAAGATGCTGAATTAAAGTTGAAAATCGGTAATAACATCCGGACGGCTCGTCTTAATAAAAACTT
TACTCAAGCGGATGTTTGTGGAGATGAATCTGAATTAACTATTCGTCAACTTGCTCGTATTGAAAATGGTCAAGTATTAG
TATCTCTTTCGAAATTATTGTTTTTATCTAAGGTATTAAATTTTCCAGTTAAAGATATAGTAGACATTGAAAAAATAGAA
ATACCCAAACGGTATTTGGAATTAAAAAATAAATTAATACGAGCTCATACTTATGGTGATGAAAAACGTATTGGCATTTT
AGAAGAAATGTTTGATGAAATATATGAGAATTTTTATGATCATCTACCAGAAGAAGAGCAACCACTAGTTGAAGTTTTAC
AAGCTCAATTAGATGTTTTTAGCAGTCGAGATGTTACGTATGGTTTGACATTGCTAGAGGAATATTTGCATCAAATTTTA
AAGAAAAAAAAGTATAGTTATAATGATCTTCTAATAATCAATCTGTATTTCGTATGTTGTGCTATTGGGTTAGAAGATAA
AACTTATTTTGAAGAATTATCTAAAAAAGTTTTATTATATATTGATTATAGTGATAATGAACGTATCTATATACTTGAAA
GAATATTGATAGGAATTTTAACACAAGTAAAAATAGAAGATTACTTAATTTATACAAAAGTTTTTCGAGAGATAACTGAG
AGTACAAATAATTTTCAACATAAACCTGTTATATATGCTTTTGAAGCCAAATATTATTTAAAAGTAGAAAAAAATCATCA
TAAAGCAGAACAGTCCTATAATAAAGCCATTGAGTTTGCTAAGATGCTGAACGATCAGGTTCTAGTGAATAACTTGACCA
AAGAAAAAGAACGAGATTTAGGTGGGAATATATCCATTACATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(82-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.627

96.091

0.362
  comR Streptococcus pyogenes MGAS8232

37.627

96.091

0.362