Detailed information NTG0135338

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: RN80_RS02090
• Genome accession: NZ_CP012646
• Coordinates: 396440..397537 (-)
• Length: 365 a.a.
• NCBI ID: WP_000266678.1
• Uniprot ID: A0ABN6KRE7
• Organism: Streptococcus mitis strain KCOM 1350 (= ChDC B183)
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 391440..402537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RN80_RS02075 (RN80_02085)	-	391907..393529 (-)	1623	WP_000958782.1	ATP-binding cassette domain-containing protein	-
RN80_RS02080 (RN80_02090)	trpS	393735..394760 (+)	1026	WP_060627327.1	tryptophan--tRNA ligase	-
RN80_RS02085 (RN80_02095)	guaB	394912..396390 (+)	1479	WP_049521113.1	IMP dehydrogenase	-
RN80_RS02090 (RN80_02100)	recF	396440..397537 (-)	1098	WP_000266678.1	DNA replication/repair protein RecF	Machinery gene
RN80_RS02095 (RN80_02105)	yaaA	397540..397908 (-)	369	WP_045612493.1	S4 domain-containing protein YaaA	-
RN80_RS02100 (RN80_02110)	yfmF	398067..399317 (+)	1251	WP_045612492.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
RN80_RS02105 (RN80_02115)	yfmH	399314..400597 (+)	1284	WP_060627328.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
RN80_RS02110 (RN80_02120)	rodZ	400639..401454 (+)	816	WP_045612488.1	cytoskeleton protein RodZ	-
RN80_RS02115 (RN80_02125)	pgsA	401465..402010 (+)	546	WP_000712127.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42026.06 Da
• Isoelectric Point: 7.6897

>NTDB_id=135338 RN80_RS02090 WP_000266678.1 396440..397537(-) (recF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKQTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLIDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKEDLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISHSIQTFITTTSLDHLQNLPENLSIFTIQDGKVSVNQN

Nucleotide

• Length: 1098 bp

>NTDB_id=135338 RN80_RS02090 WP_000266678.1 396440..397537(-) (recF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGTGGCTACAACACCTATCTCTCAAGACTTTTCGTAACTATAAAGAGACGAAAATAGACTTTAATCCTAAATTAAATGT
CTTTTTAGGACGCAATGCGCAAGGTAAAACAAATATGTTAGAGGCTATCTATTTTTTAGCCTTAACACGTAGTCATCGGA
CTCGGACAGATAAAAATCTTATTCATTTTGACGAGGAACAACTTCATCTTTCAGGTCTTGTTCAGAAACAAACGGGATCC
ATTCCTCTCGAAATCGAACTAACACAAAAAGGGCGTGTGACAAAAGTTAATCACTTAAAACAGGCACGACTTTCAGATTA
CGTAGGACACATGAATGTTGTCTTATTTGCTCCGGAAGATTTACAACTAATTAAAGGAGCACCTTCAGTTCGACGAAAAT
TCATTGATATGGAGCTTGGACAAATTAAGCCCATCTATCTATCAGATTTAACCAATTATAACCATATCCTTAAGCAAAGA
AATACCTATCTAAAATCAGCTCAAAAAATAGATGAAACCTTCCTTTCAGTTTTAGATGATCAGCTAATTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGTCGTAAGAAACATTTTGAACTCTCTAATC
AGATTGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAAGAAGACTTATCAGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGGTCCAGAGATTTATTTAAAAAGAACACTGGTGTTGGTCCTCATCGGGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGTCAAGGCCAACATCGTAGTCTCGTCCTTTCTATAAAATTAGCAGAAATCG
AGTTAATGGAAAGTATTACTACAGAATCTCCGATATTATTGCTTGACGATGTCATGAGTGAACTTGACAACACTAGACAA
CTAAAATTATTAGAAACGATTTCTCACTCAATCCAAACCTTTATTACAACAACAAGCTTAGATCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTTACTATTCAGGATGGTAAAGTTTCTGTAAATCAAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	97.808	100	0.978
recF	Bacillus subtilis subsp. subtilis str. 168	46.196	100	0.466