Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AN206_RS06780 Genome accession   NZ_CP012625
Coordinates   1329275..1330012 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SF-468     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324275..1335012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN206_RS06750 (AN206_06755) yfiL 1324434..1324799 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  AN206_RS06755 (AN206_06760) aroF 1325009..1326079 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AN206_RS06760 (AN206_06765) tyrA 1326090..1327211 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AN206_RS06765 (AN206_06770) pheA 1327254..1328414 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  AN206_RS30225 pheL 1328513..1328560 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AN206_RS06770 (AN206_06775) raiA 1328664..1329005 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AN206_RS06780 (AN206_06785) comL 1329275..1330012 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AN206_RS06785 (AN206_06790) rluD 1330147..1331127 (+) 981 WP_000079096.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AN206_RS06790 (AN206_06795) yfiH 1331124..1331855 (+) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  AN206_RS06795 (AN206_06800) clpC 1331985..1334558 (+) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=134976 AN206_RS06780 WP_000197686.1 1329275..1330012(-) (comL) [Escherichia coli strain SF-468]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=134976 AN206_RS06780 WP_000197686.1 1329275..1330012(-) (comL) [Escherichia coli strain SF-468]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376