Detailed information NTG0134838

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AMD33_RS08610
• Genome accession: NZ_CP012588
• Coordinates: 1648463..1649563 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain MN-BM-A01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1643463..1654563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD33_RS08585 (AMD33_08555)	pgsA	1644007..1644549 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AMD33_RS08590 (AMD33_08560)	-	1644562..1645419 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
AMD33_RS08595 (AMD33_08565)	yfmH	1645478..1646753 (-)	1276	Protein_1667	EF-P 5-aminopentanol modification-associated protein YfmH	-
AMD33_RS08600 (AMD33_08570)	yfmF	1646755..1648005 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AMD33_RS08605 (AMD33_08575)	yaaA	1648083..1648460 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
AMD33_RS08610 (AMD33_08580)	recF	1648463..1649563 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
AMD33_RS08615 (AMD33_08585)	guaB	1649732..1651213 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
AMD33_RS08620 (AMD33_08590)	trpS	1651390..1652412 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
AMD33_RS08625 (AMD33_08595)	-	1652840..1653712 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=134838 AMD33_RS08610 WP_002947786.1 1648463..1649563(+) (recF) [Streptococcus thermophilus strain MN-BM-A01]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=134838 AMD33_RS08610 WP_002947786.1 1648463..1649563(+) (recF) [Streptococcus thermophilus strain MN-BM-A01]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432