Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AN158_RS07030 Genome accession   NZ_CP012587
Coordinates   1529601..1530050 (-) Length   149 a.a.
NCBI ID   WP_069370501.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1524601..1535050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS07015 (AN158_07010) - 1527286..1528068 (-) 783 WP_031963609.1 pilus assembly PilX family protein -
  AN158_RS07020 (AN158_07015) pilW 1528065..1529102 (-) 1038 WP_069370499.1 PilW family protein Machinery gene
  AN158_RS07025 (AN158_07020) pilV 1529104..1529604 (-) 501 WP_119813364.1 type IV pilus modification protein PilV Machinery gene
  AN158_RS07030 (AN158_07025) fimU 1529601..1530050 (-) 450 WP_069370501.1 GspH/FimT family pseudopilin Machinery gene
  AN158_RS17440 - 1529956..1530207 (+) 252 Protein_1385 hypothetical protein -
  AN158_RS07035 (AN158_07030) ispH 1530220..1531170 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AN158_RS07040 (AN158_07035) gmk 1531293..1531922 (+) 630 WP_000015937.1 guanylate kinase -
  AN158_RS07045 (AN158_07040) rpoZ 1531995..1532273 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AN158_RS17445 - 1532312..1532442 (+) 131 Protein_1389 hypothetical protein -
  AN158_RS07050 (AN158_07045) - 1532482..1534587 (+) 2106 WP_069370502.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16148.83 Da        Isoelectric Point: 9.2303

>NTDB_id=134707 AN158_RS07030 WP_069370501.1 1529601..1530050(-) (fimU) [Acinetobacter baumannii strain CA-17]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTN
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDVTGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=134707 AN158_RS07030 WP_069370501.1 1529601..1530050(-) (fimU) [Acinetobacter baumannii strain CA-17]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTAAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGTAACCGGAGATACTACATTTGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAGATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

40.881

100

0.436