Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   AN158_RS07005 Genome accession   NZ_CP012587
Coordinates   1523097..1523573 (-) Length   158 a.a.
NCBI ID   WP_031380019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518097..1528573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS06970 (AN158_06965) - 1518170..1519201 (+) 1032 WP_001189457.1 lipase secretion chaperone -
  AN158_RS06975 (AN158_06970) - 1519316..1520257 (+) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  AN158_RS06980 (AN158_06975) rplS 1520310..1520678 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  AN158_RS06985 (AN158_06980) trmD 1520886..1521626 (-) 741 WP_058061966.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AN158_RS06990 (AN158_06985) rimM 1521672..1522220 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  AN158_RS06995 (AN158_06990) rpsP 1522240..1522491 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  AN158_RS07000 (AN158_06995) pilE 1522639..1523103 (-) 465 WP_069370497.1 type IV pilin protein Machinery gene
  AN158_RS07005 (AN158_07000) pilY2 1523097..1523573 (-) 477 WP_031380019.1 type IV pilin protein Machinery gene
  AN158_RS07010 (AN158_07005) - 1523587..1527270 (-) 3684 WP_069370498.1 PilC/PilY family type IV pilus protein -
  AN158_RS07015 (AN158_07010) - 1527286..1528068 (-) 783 WP_031963609.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17393.89 Da        Isoelectric Point: 9.7307

>NTDB_id=134704 AN158_RS07005 WP_031380019.1 1523097..1523573(-) (pilY2) [Acinetobacter baumannii strain CA-17]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=134704 AN158_RS07005 WP_031380019.1 1523097..1523573(-) (pilY2) [Acinetobacter baumannii strain CA-17]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.25

100

0.468
  comE Acinetobacter baylyi ADP1

42.424

100

0.443