Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM599_RS29230 Genome accession   NZ_CP012585
Coordinates   6367842..6368516 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PA_D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6362842..6373516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM599_RS29205 (AM599_29205) - 6363341..6364675 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  AM599_RS29210 (AM599_29210) - 6364741..6365103 (+) 363 WP_003096551.1 cupin domain-containing protein -
  AM599_RS29215 (AM599_29215) rpmG 6365240..6365395 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  AM599_RS29220 (AM599_29220) rpmB 6365407..6365643 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  AM599_RS29225 (AM599_29225) - 6365999..6367579 (+) 1581 WP_069377012.1 ABC transporter substrate-binding protein -
  AM599_RS29230 (AM599_29230) radC 6367842..6368516 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  AM599_RS29235 (AM599_29235) coaBC 6368656..6369864 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM599_RS29240 (AM599_29240) dut 6369872..6370327 (+) 456 WP_003096567.1 dUTP diphosphatase -
  AM599_RS29245 (AM599_29245) - 6370364..6372970 (+) 2607 WP_069377013.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=134670 AM599_RS29230 WP_003096559.1 6367842..6368516(-) (radC) [Pseudomonas aeruginosa strain PA_D1]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=134670 AM599_RS29230 WP_003096559.1 6367842..6368516(-) (radC) [Pseudomonas aeruginosa strain PA_D1]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397