Detailed information NTG0134217

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NF53_RS05860
• Genome accession: NZ_CP010106
• Coordinates: 1133503..1136103 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365404.1
• Uniprot ID: -
• Organism: Bacillus thuringiensis serovar indiana strain HD521
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1128503..1141103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF53_RS05820 (NF53_1050)	prsA	1129268..1130125 (-)	858	WP_001214216.1	peptidylprolyl isomerase PrsA	-
NF53_RS05825 (NF53_1051)	-	1130255..1130386 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
NF53_RS05830 (NF53_1052)	-	1130487..1131344 (+)	858	WP_000364431.1	YitT family protein	-
NF53_RS05835 (NF53_1053)	-	1131370..1131567 (-)	198	WP_000527410.1	DUF3813 domain-containing protein	-
NF53_RS05840 (NF53_1054)	-	1131568..1131708 (-)	141	WP_000516816.1	hypothetical protein	-
NF53_RS05845 (NF53_1055)	-	1131814..1132623 (-)	810	WP_001041233.1	Cof-type HAD-IIB family hydrolase	-
NF53_RS05855 (NF53_1056)	-	1133114..1133293 (+)	180	WP_000531421.1	YjzC family protein	-
NF53_RS05860 (NF53_1057)	clpC	1133503..1136103 (+)	2601	WP_000365404.1	ATP-dependent chaperone ClpB	Regulator
NF53_RS05865 (NF53_1058)	-	1136143..1136325 (-)	183	WP_001211116.1	YjzD family protein	-
NF53_RS05870 (NF53_1059)	-	1136482..1137216 (+)	735	WP_000028714.1	hydrolase	-
NF53_RS05875 (NF53_1060)	-	1137246..1138118 (+)	873	WP_001986101.1	NAD(P)-dependent oxidoreductase	-
NF53_RS05880 (NF53_1061)	comZ	1138173..1138349 (+)	177	WP_001986215.1	ComZ family protein	Regulator
NF53_RS05885 (NF53_1062)	fabH	1138570..1139502 (+)	933	WP_001100533.1	beta-ketoacyl-ACP synthase III	-
NF53_RS05890 (NF53_1063)	fabF	1139534..1140772 (+)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97426.40 Da
• Isoelectric Point: 5.1572

>NTDB_id=134217 NF53_RS05860 WP_000365404.1 1133503..1136103(+) (clpC) [Bacillus thuringiensis serovar indiana strain HD521]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEEIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKSIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=134217 NF53_RS05860 WP_000365404.1 1133503..1136103(+) (clpC) [Bacillus thuringiensis serovar indiana strain HD521]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGTGCAGAAAGTTTAATTAAAAAGAAACCTTCTGTAACGGGGAGCGGTGCAGAA
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCAATTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATCGATCCTGTAATCGGCCGTGA
TAGTGAAATACGACGTGTAATCCGTATTCTTTCACGTAAAACGAAAAACAATCCGGTTTTAATTGGGGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAAGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCACTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAGAAG
GAGCCATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACGCTCGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGGTATATTTCAGATCGATTCTTACCTGATAAAGCAATTGACCTTGTTGATGAAGCG
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAGCGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGAAATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGTCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
AAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCGAAACTCGTGGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTGTC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGCTAGCCCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGCATTGACATG
TCTGAGTATATGGAGAAACACGCAGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTAGGATATGAGGAAGGTGGTCA
ATTAACTGAAGCGGTAAGACGTAAACCATATTCCGTTGTTTTATTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGGCGCATTACAGATTCGCAAGGTCGTACAGTGGACTTTAAAAATACAGTTATT
ATTATGACTTCAAATATCGGATCTGCTCATTTACTAGATGGATTAGAAGAAGATGGTTCGATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGACAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAAGCATTGTTGATAAAATTGTAAAAGAACTACAAGGTCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTGGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCACGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (345-447)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48.114	100	0.486
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.153	100	0.425