Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   A6688_RS12365 Genome accession   NZ_CP012580
Coordinates   2629348..2629677 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_D9     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624348..2634677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6688_RS12350 (A6688_12350) - 2625077..2626021 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  A6688_RS12355 (A6688_12355) - 2626122..2627147 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  A6688_RS12360 (A6688_12360) - 2627160..2629157 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  A6688_RS12365 (A6688_12365) comEA/comE1 2629348..2629677 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  A6688_RS12375 (A6688_12375) - 2629894..2631090 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  A6688_RS12380 (A6688_12380) uvrB 2631278..2633290 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=134131 A6688_RS12365 WP_003091430.1 2629348..2629677(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA_D9]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=134131 A6688_RS12365 WP_003091430.1 2629348..2629677(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA_D9]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
TGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment