Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QR42_RS10900 Genome accession   NZ_CP010075
Coordinates   2188245..2189978 (-) Length   577 a.a.
NCBI ID   WP_039179853.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2183245..2194978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS10880 (QR42_10880) - 2184124..2185224 (-) 1101 WP_039179845.1 Rap family tetratricopeptide repeat protein -
  QR42_RS10885 (QR42_10885) - 2185212..2185409 (-) 198 WP_039179847.1 hypothetical protein -
  QR42_RS10890 (QR42_10890) spo0A 2185681..2186484 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  QR42_RS10895 (QR42_10895) spoIVB 2186769..2188046 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  QR42_RS10900 (QR42_10900) recN 2188245..2189978 (-) 1734 WP_039179853.1 DNA repair protein RecN Machinery gene
  QR42_RS10905 (QR42_10905) argR 2190012..2190461 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  QR42_RS10910 (QR42_10910) - 2190680..2191534 (-) 855 WP_039179856.1 TlyA family RNA methyltransferase -
  QR42_RS10915 (QR42_10915) dxs 2191531..2193432 (-) 1902 WP_039179859.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QR42_RS10920 (QR42_10920) - 2193583..2194479 (-) 897 WP_200885514.1 farnesyl diphosphate synthase -
  QR42_RS10925 (QR42_10925) - 2194463..2194723 (-) 261 WP_039179863.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64711.56 Da        Isoelectric Point: 4.7748

>NTDB_id=134050 QR42_RS10900 WP_039179853.1 2188245..2189978(-) (recN) [Bacillus sp. WP8]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=134050 QR42_RS10900 WP_039179853.1 2188245..2189978(-) (recN) [Bacillus sp. WP8]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGATGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTTATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCAGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCCGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCAGCGCAGTTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAGAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAGATCAATGATGATTTGAAAAAGCT
ATCTGAACAAGTATCGAATTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGCCATCTGCAGACGCT
CAAGAATAAACTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCTTCATTTGACACAGCTTTTTCTATT
CGATATGCGCCTTTTGGAAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATCTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTACAAAGTAGCATCTGGATCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCAAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTCACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment