Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QR42_RS10890 Genome accession   NZ_CP010075
Coordinates   2185681..2186484 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus sp. WP8     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2180681..2191484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS10870 (QR42_10870) - 2182885..2183121 (+) 237 WP_039179838.1 DUF2627 domain-containing protein -
  QR42_RS10875 (QR42_10875) - 2183158..2183895 (-) 738 WP_039179841.1 glycerophosphodiester phosphodiesterase -
  QR42_RS10880 (QR42_10880) - 2184124..2185224 (-) 1101 WP_039179845.1 Rap family tetratricopeptide repeat protein -
  QR42_RS10885 (QR42_10885) - 2185212..2185409 (-) 198 WP_039179847.1 hypothetical protein -
  QR42_RS10890 (QR42_10890) spo0A 2185681..2186484 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  QR42_RS10895 (QR42_10895) spoIVB 2186769..2188046 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  QR42_RS10900 (QR42_10900) recN 2188245..2189978 (-) 1734 WP_039179853.1 DNA repair protein RecN Machinery gene
  QR42_RS10905 (QR42_10905) argR 2190012..2190461 (-) 450 WP_024422938.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=134049 QR42_RS10890 WP_024422935.1 2185681..2186484(-) (spo0A) [Bacillus sp. WP8]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=134049 QR42_RS10890 WP_024422935.1 2185681..2186484(-) (spo0A) [Bacillus sp. WP8]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCCTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGCAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGGTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATTACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACCGCCAGCAGGGTGGAAC
GGGCAATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGGAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGATTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment