Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PJ19_RS03420 Genome accession   NZ_CP010072
Coordinates   638796..639569 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 01-1512     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 633796..644569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ19_RS03405 (PJ19_03405) - 634645..636579 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  PJ19_RS03410 (PJ19_03410) ilvC 636698..637720 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  PJ19_RS03415 (PJ19_03415) - 637724..638806 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  PJ19_RS03420 (PJ19_03420) dprA 638796..639569 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  PJ19_RS03425 (PJ19_03425) ruvX 639566..639949 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  PJ19_RS03430 (PJ19_03430) - 639978..640817 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PJ19_RS03435 (PJ19_03435) msrA 640993..641490 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  PJ19_RS03440 (PJ19_03440) ppa 641531..642049 (-) 519 WP_002858521.1 inorganic diphosphatase -
  PJ19_RS03445 (PJ19_03445) adk 642059..642637 (-) 579 WP_002858481.1 adenylate kinase -
  PJ19_RS03450 (PJ19_03450) aspS 642634..644385 (-) 1752 WP_014516733.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=133996 PJ19_RS03420 WP_002858613.1 638796..639569(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 01-1512]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=133996 PJ19_RS03420 WP_002858613.1 638796..639569(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 01-1512]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment