Detailed information NTG0133910

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AMR84_RS10770
• Genome accession: NZ_CP012503
• Coordinates: 2150134..2151243 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain NGBS357
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2145134..2156243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMR84_RS10745 (AMR84_10750)	-	2145506..2146345 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
AMR84_RS10750 (AMR84_10755)	pgsA	2146345..2146887 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AMR84_RS10755 (AMR84_10760)	yfmH	2147010..2148293 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
AMR84_RS10760 (AMR84_10765)	yfmF	2148295..2149539 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AMR84_RS10765 (AMR84_10770)	yaaA	2149778..2150131 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
AMR84_RS10770 (AMR84_10775)	recF	2150134..2151243 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
AMR84_RS10775 (AMR84_10780)	-	2151255..2152121 (-)	867	WP_000398683.1	GRP family sugar transporter	-
AMR84_RS10780 (AMR84_10785)	-	2152177..2152839 (-)	663	WP_001868421.1	helix-turn-helix domain-containing protein	-
AMR84_RS10785 (AMR84_10790)	guaB	2152914..2154395 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
AMR84_RS10790 (AMR84_10795)	-	2154552..2155037 (-)	486	WP_001034427.1	arginine repressor	-
AMR84_RS10795 (AMR84_10800)	-	2155047..2155727 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=133910 AMR84_RS10770 WP_000264870.1 2150134..2151243(+) (recF) [Streptococcus agalactiae strain NGBS357]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=133910 AMR84_RS10770 WP_000264870.1 2150134..2151243(+) (recF) [Streptococcus agalactiae strain NGBS357]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447