Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QX56_RS18350 Genome accession   NZ_CP010053
Coordinates   3641932..3643323 (-) Length   463 a.a.
NCBI ID   WP_039175396.1    Uniprot ID   -
Organism   Bacillus subtilis strain PS832     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636932..3648323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QX56_RS18315 (QX56_19175) flgL 3637103..3637999 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  QX56_RS18320 (QX56_19180) flgK 3638010..3639533 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QX56_RS18325 (QX56_19185) flgN 3639552..3640034 (-) 483 WP_003227999.1 flagellar protein FlgN -
  QX56_RS18330 (QX56_19190) flgM 3640050..3640316 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QX56_RS18335 (QX56_19195) yvyF 3640397..3640816 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QX56_RS18340 (QX56_19200) comFC 3640890..3641612 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QX56_RS18345 (QX56_19205) comFB 3641576..3641872 (-) 297 WP_003227989.1 late competence protein ComFB -
  QX56_RS18350 (QX56_19210) comFA 3641932..3643323 (-) 1392 WP_039175396.1 ATP-dependent helicase ComFA Machinery gene
  QX56_RS18355 (QX56_19215) fakBA 3643429..3644274 (-) 846 WP_003244125.1 DegV family protein -
  QX56_RS18360 (QX56_19220) degU 3644372..3645061 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QX56_RS18365 (QX56_19225) degS 3645144..3646301 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QX56_RS18370 (QX56_19230) yvyE 3646518..3647171 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52581.63 Da        Isoelectric Point: 10.0082

>NTDB_id=133906 QX56_RS18350 WP_039175396.1 3641932..3643323(-) (comFA) [Bacillus subtilis strain PS832]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELSAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=133906 QX56_RS18350 WP_039175396.1 3641932..3643323(-) (comFA) [Bacillus subtilis strain PS832]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGTCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.784

100

0.998

Multiple sequence alignment