Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QX56_RS18340 Genome accession   NZ_CP010053
Coordinates   3640890..3641612 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain PS832     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635890..3646612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QX56_RS18305 (QX56_19165) fliW 3636029..3636460 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  QX56_RS18310 (QX56_19170) yviE 3636481..3637056 (-) 576 WP_003243053.1 DUF6470 family protein -
  QX56_RS18315 (QX56_19175) flgL 3637103..3637999 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  QX56_RS18320 (QX56_19180) flgK 3638010..3639533 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QX56_RS18325 (QX56_19185) flgN 3639552..3640034 (-) 483 WP_003227999.1 flagellar protein FlgN -
  QX56_RS18330 (QX56_19190) flgM 3640050..3640316 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QX56_RS18335 (QX56_19195) yvyF 3640397..3640816 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QX56_RS18340 (QX56_19200) comFC 3640890..3641612 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QX56_RS18345 (QX56_19205) comFB 3641576..3641872 (-) 297 WP_003227989.1 late competence protein ComFB -
  QX56_RS18350 (QX56_19210) comFA 3641932..3643323 (-) 1392 WP_039175396.1 ATP-dependent helicase ComFA Machinery gene
  QX56_RS18355 (QX56_19215) fakBA 3643429..3644274 (-) 846 WP_003244125.1 DegV family protein -
  QX56_RS18360 (QX56_19220) degU 3644372..3645061 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QX56_RS18365 (QX56_19225) degS 3645144..3646301 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=133905 QX56_RS18340 WP_003227991.1 3640890..3641612(-) (comFC) [Bacillus subtilis strain PS832]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=133905 QX56_RS18340 WP_003227991.1 3640890..3641612(-) (comFC) [Bacillus subtilis strain PS832]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment