Detailed information NTG0133804

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AMM49_RS10250
• Genome accession: NZ_CP012480
• Coordinates: 2051438..2052547 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264866.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain NGBS128
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2046438..2057547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMM49_RS10225 (AMM49_10215)	-	2046810..2047649 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
AMM49_RS10230 (AMM49_10220)	pgsA	2047649..2048191 (-)	543	WP_000239224.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AMM49_RS10235 (AMM49_10225)	yfmH	2048314..2049597 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
AMM49_RS10240 (AMM49_10230)	yfmF	2049599..2050843 (-)	1245	WP_000706193.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AMM49_RS10245 (AMM49_10235)	yaaA	2051082..2051435 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
AMM49_RS10250 (AMM49_10240)	recF	2051438..2052547 (+)	1110	WP_000264866.1	DNA replication/repair protein RecF	Machinery gene
AMM49_RS10255 (AMM49_10245)	-	2052559..2053425 (-)	867	WP_000398683.1	GRP family sugar transporter	-
AMM49_RS10260 (AMM49_10250)	-	2053481..2054143 (-)	663	WP_001869051.1	helix-turn-helix domain-containing protein	-
AMM49_RS10265 (AMM49_10255)	guaB	2054219..2055700 (-)	1482	WP_000073444.1	IMP dehydrogenase	-
AMM49_RS10270 (AMM49_10260)	-	2055857..2056342 (-)	486	WP_001034427.1	arginine repressor	-
AMM49_RS10275 (AMM49_10265)	-	2056352..2057032 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42502.29 Da
• Isoelectric Point: 7.3132

>NTDB_id=133804 AMM49_RS10250 WP_000264866.1 2051438..2052547(+) (recF) [Streptococcus agalactiae strain NGBS128]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKSTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=133804 AMM49_RS10250 WP_000264866.1 2051438..2052547(+) (recF) [Streptococcus agalactiae strain NGBS128]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGTCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444