Detailed information    

experimental Experimentally validated

Overview

Name   RA0C_RS09875   Type   Unclear
Locus tag   RA0C_RS09875 Genome accession   NC_017045
Coordinates   2097174..2098337 (+) Length   387 a.a.
NCBI ID   WP_013447187.1    Uniprot ID   E4TDQ1
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   require for natural transformation   
Unclear

Function

RA0C_RS09855, RA0C_RS09870, RA0C_RS09875, RA0C_RS09880, RA0C_RS03780, RA0C_RS07335, RA0C_RS08100, RA0C_RS04070, RA0C_RS07455, RA0C_RS05975, RA0C_RS06070, and RA0C_RS08490 significantly affected the natural transformation frequency of RA.


Genomic Context

Location: 2092174..2103337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS09850 (RA0C_2046) - 2092718..2093626 (+) 909 WP_013447182.1 putative zinc-binding metallopeptidase -
  RA0C_RS09855 (RA0C_2047) RA0C_RS09855 2093633..2094544 (+) 912 WP_013447183.1 DUF4302 domain-containing protein Unclear
  RA0C_RS09860 (RA0C_2048) - 2094559..2095167 (+) 609 WP_013447184.1 hypothetical protein -
  RA0C_RS09865 (RA0C_2049) - 2095185..2096366 (+) 1182 WP_013447185.1 DUF4856 domain-containing protein -
  RA0C_RS09870 (RA0C_2050) RA0C_RS09870 2096402..2097163 (+) 762 WP_013447186.1 T9SS type A sorting domain-containing protein Unclear
  RA0C_RS09875 (RA0C_2051) RA0C_RS09875 2097174..2098337 (+) 1164 WP_013447187.1 imelysin family protein Unclear
  RA0C_RS09880 (RA0C_2052) RA0C_RS09880 2098327..2099700 (+) 1374 WP_013447188.1 HTTM domain-containing protein Unclear
  RA0C_RS09885 (RA0C_2053) - 2099681..2101894 (+) 2214 WP_013447189.1 TonB-dependent receptor family protein -
  RA0C_RS09890 (RA0C_2054) - 2101996..2103114 (-) 1119 WP_013447190.1 leucine-rich repeat domain-containing protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 43861.59 Da        Isoelectric Point: 6.3989

>NTDB_id=1338 RA0C_RS09875 WP_013447187.1 2097174..2098337(+) (RA0C_RS09875) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MNYFKLFFSALFCLVLFSCGGNDSPTENAKVDDGFDRKEMLRHWADNFIIPYTEKFKDEATNLDTKIKAFAQEPNQTHLT
AVREALNKTYEAYQYIGFYRLGKAEEVSMNFLYRVNTYPTNTERIKQNAKDHNYNFRQLSEIQGGKIAQGLPAIDYLVNG
LEPEDNAILMEYTSGQEAADYKAYLSALSAEILKSATEVLADWKGGYRNKFVENTDSNASGSISLMVNAYVQYYEKNLRA
AKIGYPSGVLTPMFLAQSEAPKPHLIESQFAPQYSRAYALLGTKAMLEFFQGKGINGKSGKSLQHYIDYMATKNAHHKTL
SQDIVRQFEEAIKNIEALNPNLKIQITQDLAQMKNAYFSLQQNVSKLKVDMVQSLNITISYMDTDGD

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1338 RA0C_RS09875 WP_013447187.1 2097174..2098337(+) (RA0C_RS09875) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGAATTATTTTAAACTATTTTTTTCAGCACTCTTTTGTTTGGTATTGTTTTCTTGTGGCGGTAACGATTCCCCTACGGA
AAACGCAAAGGTGGACGATGGATTTGACCGAAAAGAAATGCTCAGGCATTGGGCAGATAACTTTATCATTCCCTATACGG
AAAAGTTTAAAGATGAGGCGACCAATTTGGATACAAAGATTAAAGCGTTTGCGCAAGAGCCCAATCAAACTCATCTTACT
GCGGTGAGAGAAGCCCTTAACAAGACTTACGAAGCCTACCAGTATATTGGTTTTTATCGTTTGGGTAAGGCGGAAGAAGT
TTCTATGAATTTTCTGTATAGGGTGAATACCTACCCTACCAATACGGAACGGATAAAACAAAATGCGAAAGACCACAACT
ATAATTTCCGTCAACTTTCGGAAATTCAGGGGGGTAAAATAGCCCAAGGGCTTCCTGCGATAGATTATTTGGTGAATGGC
TTGGAGCCCGAAGATAACGCTATTTTAATGGAATACACTTCGGGGCAAGAGGCAGCGGATTATAAGGCTTATTTATCGGC
GTTGTCTGCGGAAATTTTAAAATCGGCTACCGAAGTTTTAGCAGATTGGAAGGGCGGTTACCGAAACAAATTTGTAGAAA
ATACGGATAGCAACGCTTCAGGAAGCATCAGTCTAATGGTAAATGCCTATGTGCAGTATTACGAGAAAAATCTTCGTGCA
GCTAAGATAGGTTATCCATCAGGTGTTTTAACGCCGATGTTTCTGGCACAAAGCGAAGCTCCTAAACCTCATTTGATAGA
AAGCCAGTTTGCTCCCCAGTACAGTAGAGCGTACGCCCTCTTGGGAACGAAAGCAATGCTGGAATTTTTTCAAGGCAAAG
GGATTAACGGTAAAAGTGGCAAGTCGCTACAACATTATATAGACTATATGGCGACCAAGAATGCTCATCACAAGACTTTA
TCACAAGACATTGTCCGCCAGTTTGAGGAAGCCATAAAAAATATAGAAGCTCTTAATCCTAATCTTAAAATCCAAATAAC
CCAAGATTTGGCTCAAATGAAAAATGCCTATTTCAGTCTTCAGCAGAATGTTTCTAAACTGAAAGTGGATATGGTACAAT
CGCTCAATATCACCATTTCTTATATGGATACCGATGGAGATTAA

Domains

Predicted by InterproScan.

Imelysin (Peptidase_M75)

(55-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TDQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value

References

[1] Li Huang et al. (2021) Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis. Frontiers in Microbiology 12:712198. [PMID: 34566918]