Detailed information NTG0133705

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AMD29_RS10655
• Genome accession: NZ_CP012419
• Coordinates: 2074526..2075635 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain SG-M1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2069526..2080635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD29_RS10630 (AMD29_10625)	-	2069898..2070737 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
AMD29_RS10635 (AMD29_10630)	pgsA	2070737..2071279 (-)	543	WP_000239224.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AMD29_RS10640 (AMD29_10635)	yfmH	2071402..2072685 (-)	1284	WP_000217765.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
AMD29_RS10645 (AMD29_10640)	yfmF	2072687..2073931 (-)	1245	WP_000706190.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AMD29_RS10650 (AMD29_10645)	yaaA	2074170..2074523 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
AMD29_RS10655 (AMD29_10650)	recF	2074526..2075635 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
AMD29_RS10660 (AMD29_10655)	-	2075647..2076513 (-)	867	WP_000398683.1	GRP family sugar transporter	-
AMD29_RS10665 (AMD29_10660)	-	2076569..2077231 (-)	663	WP_001871057.1	helix-turn-helix domain-containing protein	-
AMD29_RS10670 (AMD29_10665)	guaB	2077306..2078787 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
AMD29_RS10675 (AMD29_10670)	-	2078944..2079429 (-)	486	WP_001034427.1	arginine repressor	-
AMD29_RS10680 (AMD29_10675)	-	2079439..2080119 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=133705 AMD29_RS10655 WP_000264870.1 2074526..2075635(+) (recF) [Streptococcus agalactiae strain SG-M1]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=133705 AMD29_RS10655 WP_000264870.1 2074526..2075635(+) (recF) [Streptococcus agalactiae strain SG-M1]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447