Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | QR90_RS02565 | Genome accession | NZ_CP010028 |
| Coordinates | 522673..523209 (+) | Length | 178 a.a. |
| NCBI ID | WP_039681998.1 | Uniprot ID | A0A0A7KDN9 |
| Organism | Deinococcus radiopugnans strain DY59 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 517673..528209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR90_RS02540 (QR90_02540) | - | 518161..518667 (-) | 507 | WP_081994822.1 | hypothetical protein | - |
| QR90_RS02545 (QR90_02545) | odhB | 518769..520064 (-) | 1296 | WP_039681995.1 | 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | - |
| QR90_RS02550 (QR90_02550) | - | 520139..520564 (-) | 426 | WP_039681996.1 | DUF1801 domain-containing protein | - |
| QR90_RS02555 (QR90_02555) | menC | 520668..521777 (+) | 1110 | WP_039681997.1 | o-succinylbenzoate synthase | - |
| QR90_RS02560 (QR90_02560) | - | 521843..522601 (+) | 759 | WP_052195614.1 | acyl-CoA acyltransferase | - |
| QR90_RS02565 (QR90_02565) | ddrB | 522673..523209 (+) | 537 | WP_039681998.1 | single-stranded DNA-binding protein | Machinery gene |
| QR90_RS02570 (QR90_02570) | - | 523325..524353 (-) | 1029 | WP_039682000.1 | PIN/TRAM domain-containing protein | - |
| QR90_RS02575 (QR90_02575) | - | 524450..525817 (-) | 1368 | WP_039682002.1 | MFS transporter | - |
| QR90_RS02580 (QR90_02580) | - | 526040..526942 (+) | 903 | WP_039686441.1 | EamA family transporter | - |
| QR90_RS16595 | - | 526905..527723 (-) | 819 | WP_052195191.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19806.28 Da Isoelectric Point: 6.7380
>NTDB_id=133668 QR90_RS02565 WP_039681998.1 522673..523209(+) (ddrB) [Deinococcus radiopugnans strain DY59]
MLHIEFVTDLGATVTVDVESADKLLDVQRQYGRLGWTSGTVPSGGYQFPLENEPDFDWSLIGARKWTNPEGEEMVIHKGL
AYRRRELEAVDSRKMKLPAAVKYSRGARGTDPEHVREKADGEFEYVTLAIFRGGKRQDRYAIPGGRPSQQAARPAAARPQ
PVAARPAPVAVQEEETPF
MLHIEFVTDLGATVTVDVESADKLLDVQRQYGRLGWTSGTVPSGGYQFPLENEPDFDWSLIGARKWTNPEGEEMVIHKGL
AYRRRELEAVDSRKMKLPAAVKYSRGARGTDPEHVREKADGEFEYVTLAIFRGGKRQDRYAIPGGRPSQQAARPAAARPQ
PVAARPAPVAVQEEETPF
Nucleotide
Download Length: 537 bp
>NTDB_id=133668 QR90_RS02565 WP_039681998.1 522673..523209(+) (ddrB) [Deinococcus radiopugnans strain DY59]
ATGTTACACATTGAATTCGTCACCGATCTGGGCGCGACCGTCACCGTGGACGTGGAGAGCGCCGACAAGCTGCTGGACGT
GCAGCGTCAATACGGTCGGCTGGGCTGGACCAGCGGGACCGTGCCGAGTGGCGGCTACCAGTTCCCGCTGGAGAATGAAC
CAGATTTCGACTGGTCTTTAATCGGGGCCAGAAAGTGGACGAACCCCGAGGGTGAGGAAATGGTCATCCACAAGGGACTG
GCCTACCGTCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTGCCCGCCGCCGTCAAGTACAGCCGAGGCGC
ACGCGGCACCGATCCCGAACACGTCCGCGAGAAGGCCGACGGCGAGTTCGAGTACGTGACGCTGGCCATTTTCCGGGGCG
GCAAGCGGCAGGACCGTTATGCCATTCCGGGCGGACGCCCTTCCCAGCAGGCCGCCCGCCCTGCCGCAGCTCGGCCTCAG
CCGGTGGCCGCTCGCCCCGCCCCCGTGGCGGTGCAGGAGGAAGAGACACCATTCTGA
ATGTTACACATTGAATTCGTCACCGATCTGGGCGCGACCGTCACCGTGGACGTGGAGAGCGCCGACAAGCTGCTGGACGT
GCAGCGTCAATACGGTCGGCTGGGCTGGACCAGCGGGACCGTGCCGAGTGGCGGCTACCAGTTCCCGCTGGAGAATGAAC
CAGATTTCGACTGGTCTTTAATCGGGGCCAGAAAGTGGACGAACCCCGAGGGTGAGGAAATGGTCATCCACAAGGGACTG
GCCTACCGTCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTGCCCGCCGCCGTCAAGTACAGCCGAGGCGC
ACGCGGCACCGATCCCGAACACGTCCGCGAGAAGGCCGACGGCGAGTTCGAGTACGTGACGCTGGCCATTTTCCGGGGCG
GCAAGCGGCAGGACCGTTATGCCATTCCGGGCGGACGCCCTTCCCAGCAGGCCGCCCGCCCTGCCGCAGCTCGGCCTCAG
CCGGTGGCCGCTCGCCCCGCCCCCGTGGCGGTGCAGGAGGAAGAGACACCATTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
69.841 |
100 |
0.742 |