Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QR90_RS03855 Genome accession   NZ_CP010028
Coordinates   802879..805092 (-) Length   737 a.a.
NCBI ID   WP_081994869.1    Uniprot ID   -
Organism   Deinococcus radiopugnans strain DY59     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797879..810092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS03830 (QR90_03830) - 798005..799411 (-) 1407 WP_052195231.1 TrkH family potassium uptake protein -
  QR90_RS03835 (QR90_03835) - 799515..800594 (+) 1080 WP_039682375.1 methyltransferase domain-containing protein -
  QR90_RS03840 (QR90_03840) - 800641..801642 (+) 1002 WP_039682377.1 Gfo/Idh/MocA family protein -
  QR90_RS18150 - 801680..802642 (-) 963 WP_218043662.1 IS1 transposase -
  QR90_RS03855 (QR90_03855) comEC 802879..805092 (-) 2214 WP_081994869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR90_RS03860 (QR90_03860) comEA 805092..805484 (-) 393 WP_039686577.1 ComEA family DNA-binding protein Machinery gene
  QR90_RS03865 (QR90_03865) uraH 805638..806009 (-) 372 WP_039682379.1 hydroxyisourate hydrolase -
  QR90_RS03870 (QR90_03870) pucL 806009..806872 (-) 864 WP_039682381.1 factor-independent urate hydroxylase -
  QR90_RS03875 (QR90_03875) uraD 806869..807432 (-) 564 WP_039682383.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
  QR90_RS03880 (QR90_03880) dnaJ 807741..808862 (+) 1122 WP_039682385.1 molecular chaperone DnaJ -
  QR90_RS03885 (QR90_03885) - 809063..809809 (+) 747 WP_039682387.1 META domain-containing protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 77236.41 Da        Isoelectric Point: 9.0190

>NTDB_id=133669 QR90_RS03855 WP_081994869.1 802879..805092(-) (comEC) [Deinococcus radiopugnans strain DY59]
MQRAAWAVASLGAEGSGGRLAWSVPAVFGVMGGIQLGLGAWWGALTLLGVGLALRDARPLLAALALLGAALGFGAERLVT
GRADPMAPWLGAQVTLTGEWDGQFLTLKDPPARLAVAPKPTSKPGHLVVSGRLVAPEGQRTPGGFDQAAWLRAQGGVLLP
TPTAVLVAAKVRGSQAEGGLRGWFRRGLTAGLPAREAALMTAIELGDRNDIGREEFAEGYGIRDGFNRSGLAHLMALSGQ
NVALITVVLIWLFGWLRWPPLWRYGVPALLLLPYLALVGVSPSITRAVIMGFTVLAALALGRGRPDPSGLLALTALVCLL
LFPLWLLDIGFQLSFLAVLALTLSLKAAGKLPERWPLWLRLALVATVLAELGTLPVIAATFGQLPVVGLPANLAAGAVMT
ALVPLGFLAGLLGPAAAVINPLVELLAALLLGIVKVFGQAPVLTWGQVSPAGFAAYAVCAAAGVLWLWDRVRLRTVLGVA
LACTLLTVLPGKLHPPREIVYLDVGQGDATLVRLPHLTVLVDAGGSVGSDYDVGGKTVVPALRALGVRKIDVVIGTHADT
DHMEGISGVLRALPVGELWIGQRKTDDPVLTAVLDAAQEAGVPVREVRRGDQIASDGVSLTVLWPTGQVWSTEDNENSVA
VRLESGSWHTALLGDLPDPAEHFLGLGHLNLLKVAHHGSRFSTDAGLLRETTPADAVISVGRNTYGHPNPEMLGRLGAAA
VKVWRTDQLGTIRWPIP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=133669 QR90_RS03855 WP_081994869.1 802879..805092(-) (comEC) [Deinococcus radiopugnans strain DY59]
ATGCAAAGGGCGGCGTGGGCGGTGGCCTCCCTGGGTGCCGAGGGCTCGGGAGGACGGCTGGCGTGGTCTGTTCCCGCCGT
GTTCGGCGTGATGGGCGGCATCCAGCTGGGGCTGGGCGCGTGGTGGGGCGCGTTGACGCTGCTGGGTGTGGGGCTGGCCC
TGCGCGACGCCCGCCCCCTGCTGGCCGCGCTGGCGCTGCTGGGCGCGGCGCTGGGCTTCGGGGCCGAGCGGCTGGTGACC
GGGCGGGCCGATCCGATGGCCCCCTGGCTGGGTGCGCAGGTCACGCTGACCGGCGAGTGGGACGGACAATTCCTGACCCT
GAAAGACCCACCGGCGCGGCTGGCGGTGGCCCCCAAACCCACCTCGAAACCGGGCCACTTGGTGGTCAGCGGGCGGCTGG
TGGCCCCCGAAGGCCAGCGCACCCCCGGCGGCTTCGATCAGGCGGCGTGGCTGCGAGCCCAGGGCGGCGTGCTGCTGCCC
ACGCCGACGGCGGTGCTGGTGGCGGCGAAGGTGCGCGGCTCCCAGGCCGAAGGGGGGCTGCGGGGCTGGTTCCGGCGCGG
CCTGACCGCTGGCCTCCCCGCGCGTGAGGCTGCGCTGATGACCGCCATTGAGCTGGGCGACCGCAATGACATCGGCCGCG
AGGAATTCGCCGAGGGCTACGGCATCCGCGACGGCTTCAACCGCTCCGGGCTGGCGCACCTGATGGCGCTGTCGGGCCAG
AACGTCGCGCTGATCACGGTGGTGCTGATCTGGCTGTTCGGCTGGCTGCGGTGGCCGCCGCTGTGGCGCTACGGCGTGCC
CGCCCTGCTGCTGCTGCCGTACCTGGCGCTGGTGGGGGTGTCGCCCAGCATCACCCGCGCGGTGATCATGGGCTTCACGG
TGCTGGCGGCCCTGGCACTGGGGCGCGGGCGGCCCGATCCCTCCGGCCTGCTGGCGCTGACCGCCCTGGTCTGCCTGCTG
CTGTTTCCGCTGTGGCTGCTGGACATCGGCTTTCAGCTGTCGTTCCTGGCGGTGCTGGCCCTCACGCTGTCCCTGAAGGC
CGCCGGAAAACTGCCGGAGCGCTGGCCGCTGTGGCTGAGACTGGCGCTGGTGGCGACGGTGCTGGCCGAGCTGGGCACCC
TGCCCGTAATCGCCGCCACCTTCGGGCAACTGCCGGTGGTGGGGTTGCCCGCCAATCTGGCGGCAGGCGCGGTGATGACC
GCCCTGGTGCCGCTGGGCTTTCTGGCCGGGCTGCTGGGGCCGGCGGCGGCGGTGATCAACCCATTGGTGGAGCTGCTGGC
CGCGCTACTGCTGGGCATCGTGAAGGTGTTCGGGCAGGCCCCGGTGCTGACCTGGGGGCAGGTGTCGCCCGCCGGCTTCG
CGGCCTACGCGGTGTGCGCGGCGGCGGGCGTGCTGTGGTTGTGGGATCGCGTGCGCCTGCGGACGGTGCTGGGCGTGGCG
CTGGCCTGCACGCTGCTGACCGTGCTGCCGGGAAAACTGCATCCGCCCCGCGAAATCGTGTATCTCGATGTCGGTCAGGG
GGATGCCACCCTCGTCCGTCTGCCTCATTTAACCGTGCTGGTGGACGCGGGCGGTTCGGTGGGCTCCGACTACGACGTGG
GCGGCAAGACCGTCGTGCCGGCCCTGCGGGCGCTGGGGGTTCGGAAAATTGACGTGGTGATCGGCACCCATGCCGATACC
GACCACATGGAGGGCATCAGCGGCGTGCTGCGCGCCCTGCCGGTGGGTGAACTGTGGATCGGCCAGCGCAAGACGGACGA
TCCGGTGTTGACCGCCGTGCTGGACGCCGCCCAGGAGGCTGGGGTGCCGGTGCGCGAGGTTCGGCGCGGCGACCAGATCG
CCTCGGACGGCGTGAGCCTGACCGTGCTGTGGCCCACCGGGCAGGTCTGGAGCACCGAGGACAACGAGAACAGCGTGGCC
GTGCGCCTGGAATCCGGCAGCTGGCACACCGCTCTTCTGGGTGACCTGCCCGACCCCGCCGAGCACTTTCTGGGGCTGGG
TCACCTGAACCTGTTGAAAGTCGCGCACCACGGCAGCCGCTTTTCCACCGATGCCGGGCTGCTCCGGGAAACCACGCCCG
CCGACGCGGTGATCAGCGTGGGCCGCAACACCTACGGCCACCCGAACCCGGAAATGCTGGGACGGCTGGGAGCAGCAGCC
GTGAAGGTCTGGCGCACCGATCAGCTGGGCACCATCCGCTGGCCGATTCCATGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(519-657)

Competence protein (Competence)

(223-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.116

99.186

0.646

Multiple sequence alignment