Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QR90_RS03860 Genome accession   NZ_CP010028
Coordinates   805092..805484 (-) Length   130 a.a.
NCBI ID   WP_039686577.1    Uniprot ID   -
Organism   Deinococcus radiopugnans strain DY59     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800092..810484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS03840 (QR90_03840) - 800641..801642 (+) 1002 WP_039682377.1 Gfo/Idh/MocA family protein -
  QR90_RS18150 - 801680..802642 (-) 963 WP_218043662.1 IS1 transposase -
  QR90_RS03855 (QR90_03855) comEC 802879..805092 (-) 2214 WP_081994869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR90_RS03860 (QR90_03860) comEA 805092..805484 (-) 393 WP_039686577.1 ComEA family DNA-binding protein Machinery gene
  QR90_RS03865 (QR90_03865) uraH 805638..806009 (-) 372 WP_039682379.1 hydroxyisourate hydrolase -
  QR90_RS03870 (QR90_03870) pucL 806009..806872 (-) 864 WP_039682381.1 factor-independent urate hydroxylase -
  QR90_RS03875 (QR90_03875) uraD 806869..807432 (-) 564 WP_039682383.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
  QR90_RS03880 (QR90_03880) dnaJ 807741..808862 (+) 1122 WP_039682385.1 molecular chaperone DnaJ -
  QR90_RS03885 (QR90_03885) - 809063..809809 (+) 747 WP_039682387.1 META domain-containing protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 13282.44 Da        Isoelectric Point: 9.8303

>NTDB_id=133670 QR90_RS03860 WP_039686577.1 805092..805484(-) (comEA) [Deinococcus radiopugnans strain DY59]
MTDAERGWTVALGAGVLLVGALALGPLLAPRPQVPTVTRGALPAPGTPATQTANTEPPTYPTTASITPLISGRVNLNTAT
QEQLEALPKVGPSMAARIIAARPIRSQADLDAIKGVGEATLKVLVPLVSY

Nucleotide


Download         Length: 393 bp        

>NTDB_id=133670 QR90_RS03860 WP_039686577.1 805092..805484(-) (comEA) [Deinococcus radiopugnans strain DY59]
GTGACCGATGCCGAGCGGGGGTGGACCGTGGCCCTGGGCGCGGGCGTGCTGCTGGTGGGCGCGCTGGCGCTGGGGCCGCT
GCTCGCGCCCCGTCCGCAGGTGCCGACAGTGACGCGCGGGGCGCTGCCCGCACCGGGTACGCCTGCAACGCAGACGGCGA
ACACAGAGCCGCCGACCTACCCCACCACCGCCAGCATCACGCCGCTGATTTCGGGCCGGGTCAACCTGAACACAGCCACG
CAGGAGCAGCTGGAGGCGCTGCCTAAAGTCGGCCCCTCCATGGCGGCCCGAATCATCGCTGCGCGGCCCATCCGCTCGCA
GGCCGATCTGGACGCCATCAAGGGCGTGGGCGAGGCGACGCTGAAGGTGCTGGTCCCGCTGGTCAGCTATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(73-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70

100

0.7

Multiple sequence alignment