Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AMD29_RS05085 Genome accession   NZ_CP012419
Coordinates   972890..973960 (-) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae strain SG-M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967890..978960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS05065 (AMD29_05055) - 968425..969177 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  AMD29_RS05070 (AMD29_05060) - 969179..971134 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  AMD29_RS05075 (AMD29_05065) braR 971244..971912 (+) 669 WP_017647712.1 response regulator transcription factor Regulator
  AMD29_RS05080 (AMD29_05070) - 971909..972847 (+) 939 WP_000620981.1 sensor histidine kinase -
  AMD29_RS05085 (AMD29_05075) xerS 972890..973960 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  AMD29_RS05090 (AMD29_05080) - 974413..976074 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  AMD29_RS05095 (AMD29_05085) - 976107..976880 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  AMD29_RS05100 (AMD29_05090) - 976870..977556 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=133660 AMD29_RS05085 WP_000817930.1 972890..973960(-) (xerS) [Streptococcus agalactiae strain SG-M1]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=133660 AMD29_RS05085 WP_000817930.1 972890..973960(-) (xerS) [Streptococcus agalactiae strain SG-M1]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837

Multiple sequence alignment