Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AMD29_RS05075 Genome accession   NZ_CP012419
Coordinates   971244..971912 (+) Length   222 a.a.
NCBI ID   WP_017647712.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 966244..976912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS05055 (AMD29_05045) - 966783..967271 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  AMD29_RS05060 (AMD29_05050) - 967437..968399 (+) 963 WP_001253127.1 S41 family peptidase -
  AMD29_RS05065 (AMD29_05055) - 968425..969177 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  AMD29_RS05070 (AMD29_05060) - 969179..971134 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  AMD29_RS05075 (AMD29_05065) braR 971244..971912 (+) 669 WP_017647712.1 response regulator transcription factor Regulator
  AMD29_RS05080 (AMD29_05070) - 971909..972847 (+) 939 WP_000620981.1 sensor histidine kinase -
  AMD29_RS05085 (AMD29_05075) xerS 972890..973960 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  AMD29_RS05090 (AMD29_05080) - 974413..976074 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  AMD29_RS05095 (AMD29_05085) - 976107..976880 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25416.54 Da        Isoelectric Point: 5.6814

>NTDB_id=133659 AMD29_RS05075 WP_017647712.1 971244..971912(+) (braR) [Streptococcus agalactiae strain SG-M1]
MSQEQGKIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMKMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=133659 AMD29_RS05075 WP_017647712.1 971244..971912(+) (braR) [Streptococcus agalactiae strain SG-M1]
ATGTCACAAGAGCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGAAAATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAAGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.789

98.198

0.459