Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QF06_RS16120 Genome accession   NZ_CP010014
Coordinates   3265275..3266666 (-) Length   463 a.a.
NCBI ID   WP_041850475.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3260275..3271666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS16085 (QF06_16090) flgL 3260446..3261342 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QF06_RS16090 (QF06_16095) flgK 3261353..3262876 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QF06_RS16095 (QF06_16100) flgN 3262895..3263377 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QF06_RS16100 (QF06_16105) flgM 3263393..3263659 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QF06_RS16105 (QF06_16110) - 3263740..3264159 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QF06_RS16110 (QF06_16115) comFC 3264233..3264955 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QF06_RS16115 (QF06_16120) comFB 3264919..3265215 (-) 297 WP_003227989.1 late competence protein ComFB -
  QF06_RS16120 (QF06_16125) comFA 3265275..3266666 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  QF06_RS16125 (QF06_16130) - 3266772..3267617 (-) 846 WP_003227986.1 DegV family protein -
  QF06_RS16130 (QF06_16135) degU 3267715..3268404 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QF06_RS16135 (QF06_16140) degS 3268487..3269644 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QF06_RS16140 (QF06_16145) - 3269861..3270514 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52485.50 Da        Isoelectric Point: 9.9185

>NTDB_id=133589 QF06_RS16120 WP_041850475.1 3265275..3266666(-) (comFA) [Bacillus sp. YP1]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENAPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTIVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=133589 QF06_RS16120 WP_041850475.1 3265275..3266666(-) (comFA) [Bacillus sp. YP1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGAAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGC
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCATCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978

Multiple sequence alignment