Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QF06_RS14170 Genome accession   NZ_CP010014
Coordinates   2866189..2866833 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861189..2871833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS14135 (QF06_14135) - 2862381..2862812 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  QF06_RS14140 (QF06_14140) - 2862812..2863153 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QF06_RS14145 (QF06_14145) - 2863146..2864627 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  QF06_RS14150 (QF06_14150) - 2864633..2865109 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  QF06_RS14155 (QF06_14155) - 2865109..2865393 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QF06_RS14160 (QF06_14160) mnhG 2865377..2865751 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  QF06_RS14165 (QF06_14165) - 2865790..2866170 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  QF06_RS14170 (QF06_14170) comA 2866189..2866833 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QF06_RS14175 (QF06_14175) comP 2866914..2869214 (-) 2301 WP_043940185.1 histidine kinase Regulator
  QF06_RS14180 (QF06_14180) comX 2869226..2869390 (-) 165 WP_015384519.1 competence pheromone ComX -
  QF06_RS14185 (QF06_14185) - 2869403..2870263 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  QF06_RS14190 (QF06_14190) degQ 2870447..2870587 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QF06_RS22165 - 2870809..2870871 (+) 63 Protein_2889 hypothetical protein -
  QF06_RS14195 (QF06_14195) - 2871050..2871418 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=133583 QF06_RS14170 WP_003220716.1 2866189..2866833(-) (comA) [Bacillus sp. YP1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=133583 QF06_RS14170 WP_003220716.1 2866189..2866833(-) (comA) [Bacillus sp. YP1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment