Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QF06_RS04590 Genome accession   NZ_CP010014
Coordinates   944144..945097 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus sp. YP1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 939144..950097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS04565 (QF06_04565) argF 940976..941935 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  QF06_RS04570 (QF06_04570) - 942021..942200 (+) 180 WP_003245356.1 YjzC family protein -
  QF06_RS04575 (QF06_04575) - 942246..942431 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  QF06_RS04580 (QF06_04580) - 942680..943414 (+) 735 WP_003245223.1 hypothetical protein -
  QF06_RS04585 (QF06_04585) - 943496..944053 (+) 558 WP_003232974.1 hypothetical protein -
  QF06_RS04590 (QF06_04590) med 944144..945097 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  QF06_RS04595 (QF06_04595) comZ 945112..945303 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QF06_RS04600 (QF06_04600) yjzB 945333..945572 (-) 240 WP_003232972.1 spore coat protein YjzB -
  QF06_RS04605 (QF06_04605) fabH 945737..946675 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  QF06_RS04610 (QF06_04610) fabF 946698..947939 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  QF06_RS04615 (QF06_04615) - 948015..948800 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  QF06_RS04620 (QF06_04620) appD 948992..949978 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=133541 QF06_RS04590 WP_003245494.1 944144..945097(+) (med) [Bacillus sp. YP1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=133541 QF06_RS04590 WP_003245494.1 944144..945097(+) (med) [Bacillus sp. YP1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment