Detailed information NTG0133457

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC9_RS02230
• Genome accession: NZ_CP009984
• Coordinates: 452499..453491 (+)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain FORC_009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 447499..458491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC9_RS02195 (FORC9_0388)	ftsB	447530..447811 (+)	282	WP_011079514.1	cell division protein FtsB	-
FORC9_RS02200 (FORC9_0389)	ispD	447811..448524 (+)	714	WP_060530752.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC9_RS02205 (FORC9_0390)	ispF	448521..448997 (+)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC9_RS02210 (FORC9_0391)	truD	449033..450076 (+)	1044	WP_060530754.1	tRNA pseudouridine(13) synthase TruD	-
FORC9_RS02215 (FORC9_0392)	surE	450082..450849 (+)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
FORC9_RS02220 (FORC9_0393)	-	450852..451478 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC9_RS02225 (FORC9_0394)	-	451522..452418 (+)	897	WP_060530756.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC9_RS02230 (FORC9_0395)	rpoS	452499..453491 (+)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
FORC9_RS02235 (FORC9_0396)	mutS	453567..456128 (-)	2562	WP_060530758.1	DNA mismatch repair protein MutS	-
FORC9_RS02240 (FORC9_0397)	pncC	456212..456715 (+)	504	WP_060530760.1	nicotinamide-nucleotide amidase	-
FORC9_RS02245 (FORC9_0398)	recA	456850..457899 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
FORC9_RS02250 (FORC9_0399)	recX	458003..458464 (+)	462	WP_060530761.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=133457 FORC9_RS02230 WP_045596855.1 452499..453491(+) (rpoS) [Vibrio vulnificus strain FORC_009]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=133457 FORC9_RS02230 WP_045596855.1 452499..453491(+) (rpoS) [Vibrio vulnificus strain FORC_009]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGAGGCTTCCGTTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGTTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833