Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DE10444_RS10190 Genome accession   NZ_CP012392
Coordinates   1970283..1970789 (+) Length   168 a.a.
NCBI ID   WP_002230899.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965283..1975789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS10160 (DE10444_1902) - 1965466..1966119 (+) 654 WP_065824993.1 IS1595 family transposase -
  DE10444_RS10165 (DE10444_1903) - 1966332..1967867 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  DE10444_RS12790 (DE10444_1904) - 1967864..1967956 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DE10444_RS10170 (DE10444_1905) lysA 1967992..1969236 (-) 1245 WP_002218097.1 diaminopimelate decarboxylase -
  DE10444_RS10175 (DE10444_1906) lptM 1969247..1969417 (-) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  DE10444_RS10180 (DE10444_1907) cyaY 1969488..1969811 (+) 324 WP_002218099.1 iron donor protein CyaY -
  DE10444_RS10185 (DE10444_1908) - 1969842..1970261 (+) 420 WP_002218100.1 DUF2251 domain-containing protein -
  DE10444_RS10190 (DE10444_1909) luxS 1970283..1970789 (+) 507 WP_002230899.1 S-ribosylhomocysteine lyase Regulator
  DE10444_RS10195 (DE10444_1910) polA 1970935..1973751 (+) 2817 WP_002230901.1 DNA polymerase I -
  DE10444_RS10200 (DE10444_1911) - 1974498..1975505 (-) 1008 WP_065824994.1 IS5 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18739.52 Da        Isoelectric Point: 5.5451

>NTDB_id=133459 DE10444_RS10190 WP_002230899.1 1970283..1970789(+) (luxS) [Neisseria meningitidis strain DE10444]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=133459 DE10444_RS10190 WP_002230899.1 1970283..1970789(+) (luxS) [Neisseria meningitidis strain DE10444]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGAAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768

Multiple sequence alignment