Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DE10444_RS05245 Genome accession   NZ_CP012392
Coordinates   1052926..1053603 (+) Length   225 a.a.
NCBI ID   WP_002230496.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047926..1058603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS05225 (DE10444_0970) leuD 1048731..1049372 (-) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  DE10444_RS05230 (DE10444_0971) - 1049434..1049688 (-) 255 WP_002213442.1 hypothetical protein -
  DE10444_RS05235 (DE10444_0972) leuC 1049785..1051194 (-) 1410 WP_002230498.1 3-isopropylmalate dehydratase large subunit -
  DE10444_RS05240 (DE10444_0973) gshA 1051454..1052803 (+) 1350 WP_002230490.1 glutamate--cysteine ligase -
  DE10444_RS14250 - 1052777..1052899 (-) 123 WP_255265604.1 hypothetical protein -
  DE10444_RS05245 (DE10444_0974) ysxA/radC 1052926..1053603 (+) 678 WP_002230496.1 RadC family protein Machinery gene
  DE10444_RS05250 (DE10444_0975) - 1053676..1054401 (+) 726 WP_002230495.1 epoxyqueuosine reductase QueH -
  DE10444_RS05255 (DE10444_0976) - 1054554..1055834 (+) 1281 WP_002230491.1 CAP domain-containing protein -
  DE10444_RS05260 (DE10444_0977) hflX 1055839..1057017 (+) 1179 WP_002230493.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24960.80 Da        Isoelectric Point: 5.7262

>NTDB_id=133429 DE10444_RS05245 WP_002230496.1 1052926..1053603(+) (ysxA/radC) [Neisseria meningitidis strain DE10444]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQEGIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=133429 DE10444_RS05245 WP_002230496.1 1052926..1053603(+) (ysxA/radC) [Neisseria meningitidis strain DE10444]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGGGCATCGTCCTGTCCGACCCCGA
TACGGTTGCCGATTACCTGCGCTTTCATTTGGGACAGGAAAAAGTCGAAGTCAGCGTCGCACTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGAGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGACAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378