Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FORC8_RS01605 | Genome accession | NZ_CP009982 |
| Coordinates | 333674..334252 (+) | Length | 192 a.a. |
| NCBI ID | WP_053046790.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_008 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 328674..339252
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC8_RS01590 (FORC8_0267) | oxyR | 328997..329905 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| FORC8_RS01595 (FORC8_0268) | - | 329961..332531 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FORC8_RS01600 (FORC8_0269) | pilM | 332674..333690 (+) | 1017 | WP_029802009.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC8_RS01605 (FORC8_0270) | pilN | 333674..334252 (+) | 579 | WP_053046790.1 | PilN domain-containing protein | Machinery gene |
| FORC8_RS01610 (FORC8_0271) | pilO | 334245..334838 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC8_RS01615 (FORC8_0272) | pilP | 334828..335343 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC8_RS01620 (FORC8_0273) | pilQ | 335375..337123 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC8_RS01625 (FORC8_0274) | aroK | 337312..337830 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC8_RS01630 (FORC8_0275) | aroB | 337862..338962 (+) | 1101 | WP_053046792.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22396.87 Da Isoelectric Point: 6.9944
>NTDB_id=133402 FORC8_RS01605 WP_053046790.1 333674..334252(+) (pilN) [Vibrio parahaemolyticus strain FORC_008]
MLYRINLLPWRENQREEHRRRFGGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFGGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=133402 FORC8_RS01605 WP_053046790.1 333674..334252(+) (pilN) [Vibrio parahaemolyticus strain FORC_008]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGGCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGGCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |